CLDN5

Basic Information

Gene Symbol	CLDN5
Entrez Id	7122
Position	chr22:19510547..19512860
Description	claudin 5
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10314	22:19510718	C/G	CLDN5	untranslated-3	0.975	1.02041	0.0152	0.1844		5
rs116357259	22:19514654	T/C	CLDN5	near-gene-5,untranslated-5	0.812	1.00140	0.0686	0.9841		5
rs12628900	22:19510872	T/C	CLDN5	untranslated-3	0.933	1.04645	0.0350	0.195		4
rs16983833	22:19513897	T/C	CLDN5	intron,near-gene-5	0.947	1.00783	0.0355	0.8261		5
rs45471292	22:19513692	T/C	CLDN5	intron,near-gene-5	0.938	1.01359	0.0364	0.7112		5
rs45485695	22:19510744	T/C	CLDN5	untranslated-3	0.956	0.99273	0.0352	0.8363		5
rs45542636	22:19514467	T/C	CLDN5	near-gene-5,untranslated-5	0.803	0.98118	0.0348	0.5851		5
rs45596741	22:19514251	A/G	CLDN5	near-gene-5,untranslated-5	0.921	1.04352	0.0352	0.2256		5
rs79771248	22:19513693	T/C	CLDN5	intron,near-gene-5	0.924	0.95801	0.0352	0.2221		5
rs885984	22:19511008	A/G	CLDN5	untranslated-3	0.960	1.02798	0.0256	0.2804		4
rs885985	22:19511925	A/G	CLDN5	nonsense	0.971	1.01898	0.0108	0.08062		4
rs9604969	22:19514013	A/G	CLDN5	intron,near-gene-5	0.943	0.98295	0.0202	0.3941		5
rs9606048	22:19513876	T/C	CLDN5	intron,near-gene-5	0.972	1.00884	0.0107	0.4139		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

Reference	Study type	Sample size
18668038	GWAS	3391 cases; 3181 controls
18511947	GWAS	359 cases; 718 controls
19181681	GWAS	471 cases; 2792 controls
Reference	Study type	Sample size

eQTL Information