CHRNB4

Basic Information

Gene Symbol	CHRNB4
Entrez Id	1143
Position	chr15:78916636..78933587
Description	cholinergic receptor, nicotinic, beta 4 (neuronal)
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs11072768	15:78929478	T/G	CHRNB4	intron	0.983	0.93351	0.0132	1.707E-7		5
rs113503352	15:78917981	T/C	CHRNB4	intron	0.905	0.98699	0.0492	0.7904		5
rs12440014	15:78926726	C/G	CHRNB4	intron	0.937	1.07713	0.0128	5.527E-9		5
rs12440298	15:78927589	T/G	CHRNB4	intron	0.760	1.04164	0.0411	0.3214		5
rs12441088	15:78928264	T/G	CHRNB4	intron	0.869	1.05792	0.0127	9.392E-6		7
rs12441998	15:78929372	A/G	CHRNB4	intron	0.983	1.07037	0.0132	2.345E-7		5
rs12593950	15:78920935	C/G	CHRNB4	intron	0.958	0.92376	0.0128	5.848E-10		5
rs12914008	15:78923505	A/G	CHRNB4	missense	0.970	1.02922	0.0280	0.3036		5
rs1316971	15:78930510	A/G	CHRNB4	intron	0.984	0.93482	0.0132	2.961E-7		5
rs138868504	15:78931734	A/G	CHRNB4	intron	0.717	0.95047	0.0620	0.4127		-
rs141208602	15:78931463	T/G	CHRNB4	intron	0.709	0.94214	0.0316	0.05933		-
rs147836076	15:78924600	T/G	CHRNB4	intron	0.859	0.99233	0.0121	0.5279		-
rs17487223	15:78923987	T/C	CHRNB4	intron	0.967	1.05654	0.0113	1.222E-6		5
rs187891813	15:78934793	A/C	CHRNB4	near-gene-5	0.640	0.92654	0.0681	0.2625		-
rs191756285	15:78924534	T/G	CHRNB4	intron	0.657	1.04415	0.0418	0.3019		-
rs28534575	15:78923845	T/G	CHRNB4	intron	0.954	1.08361	0.0128	3.819E-10		5
rs28544432	15:78924538	T/G	CHRNB4	intron	0.753	1.06194	0.0159	0.0001627		6
rs2904130	15:78916622	C/G	CHRNB4	near-gene-3	0.977	1.01035	0.0112	0.3579		5
rs36045869	15:78929498	T/C	CHRNB4	intron	0.962	1.00662	0.0111	0.5548		5
rs3813567	15:78934551	A/G	CHRNB4	near-gene-5	0.951	1.07144	0.0132	1.867E-7		5
rs4887072	15:78925435	A/G	CHRNB4	intron	0.949	1.08199	0.0129	8.575E-10		5
rs62010337	15:78924542	T/G	CHRNB4	intron	0.630	0.97171	0.0135	0.03357		6
rs6495309	15:78915245	T/C	CHRNB4	near-gene-5	0.979	0.92284	0.0127	2.945E-10		5
rs67175876	15:78928399	A/G	CHRNB4	intron	0.941	1.07037	0.0132	2.361E-7		7
rs67426328	15:78934318	C/G	CHRNB4	near-gene-5	0.958	0.95142	0.0113	0.00001016		5
rs71528526	15:78923092	T/C	CHRNB4	intron	0.896	0.99700	0.0492	0.9508		5
rs7178270	15:78921077	C/G	CHRNB4	intron	0.968	0.99005	0.0109	0.357		5
rs72648902	15:78934148	A/T	CHRNB4	near-gene-5	0.635	0.86936	0.0552	0.01122		5
rs72743157	15:78926250	A/G	CHRNB4	intron	0.727	0.87871	0.0478	0.006863		5
rs72743158	15:78926445	T/C	CHRNB4	intron	0.953	0.94762	0.0114	2.3E-6		5
rs72743168	15:78935235	T/C	CHRNB4	near-gene-5	0.666	1.00190	0.0262	0.9408		4
rs77802411	15:78925414	T/C	CHRNB4	intron	0.710	0.94242	0.0317	0.06177		5
rs79609284	15:78928411	A/G	CHRNB4	intron	0.929	1.00965	0.0117	0.4117		7
rs8039449	15:78914534	T/C	CHRNB4	near-gene-5	0.979	1.05117	0.0111	7.615E-6		5
rs950776	15:78926018	T/C	CHRNB4	intron	0.985	0.98876	0.0113	0.3187		1f
rs9920506	15:78931057	A/G	CHRNB4	intron	0.856	0.93763	0.0144	7.968E-6		4
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information