CHRNB2

Basic Information

Gene Symbol	CHRNB2
Entrez Id	1141
Position	chr1:154540257..154552354
Description	cholinergic receptor, nicotinic, beta 2 (neuronal)
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs111829145	1:154545240	T/C	CHRNB2	intron	0.747	1.03531	0.0552	0.5305		5
rs12072348	1:154547292	A/C	CHRNB2	intron	0.891	1.02347	0.0181	0.1998		4
rs12130403	1:154549470	T/C	CHRNB2	untranslated-3	0.967	0.99035	0.0117	0.4077		4
rs138398618	1:154541717	A/G	CHRNB2	intron	0.730	1.01674	0.0579	0.7749		-
rs2072658	1:154540225	A/G	CHRNB2	near-gene-5	0.611	1.08123	0.0404	0.05324		3a
rs2072659	1:154548521	C/G	CHRNB2	untranslated-3	0.725	1.03614	0.0199	0.07487		5
rs2072660	1:154548721	T/C	CHRNB2	untranslated-3	0.946	1.01147	0.0127	0.369		2b
rs2072661	1:154548880	A/G	CHRNB2	untranslated-3	0.943	1.00793	0.0126	0.53		4
rs2280781	1:154540468	T/C	CHRNB2	near-gene-5,untranslated-5	0.967	0.98255	0.0190	0.3535		2a
rs3811450	1:154551032	T/C	CHRNB2	intron,untranslated-3	0.985	0.97521	0.0199	0.2065		5
rs4292956	1:154548946	T/C	CHRNB2	untranslated-3	0.971	0.97210	0.0201	0.158		2b
rs45490696	1:154548992	T/C	CHRNB2	untranslated-3	0.972	0.97229	0.0201	0.1615		5
rs4845378	1:154544651	T/G	CHRNB2	intron	0.942	0.97648	0.0193	0.2169		5
rs4845653	1:154551368	A/G	CHRNB2	intron,untranslated-3	0.937	0.97453	0.0152	0.08939		6
rs61811372	1:154543215	T/C	CHRNB2	intron	0.978	1.02214	0.0192	0.2561		5
rs6680410	1:154550724	T/C	CHRNB2	intron,untranslated-3	0.981	0.97472	0.0199	0.1986		5
rs67860750	1:154538917	C/G	CHRNB2	near-gene-5	0.760	0.99581	0.0180	0.8145		7
rs71651696	1:154540015	C/G	CHRNB2	near-gene-5	0.780	0.93866	0.0278	0.02281		5
rs78038982	1:154539156	T/G	CHRNB2	near-gene-5	0.800	1.00371	0.0387	0.9248		5
rs8192484	1:154541839	A/T	CHRNB2	intron	0.689	0.98344	0.0469	0.7226		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information