CHRNA7

Basic Information

Gene Symbol	CHRNA7
Entrez Id	1139
Position	chr15:32322691..32462384
Description	cholinergic receptor, nicotinic, alpha 7 (neuronal)
Gene type	protein-coding

SNP Information

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SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1039394	15:32407729	C/G	CHRNA7	intron	0.681	0.94393	0.0258	0.0253		7
rs10438287	15:32402003	A/G	CHRNA7	intron	0.989	1.00975	0.0131	0.4571		7
rs10438339	15:32400218	T/C	CHRNA7	intron	0.802	1.00985	0.0118	0.4059		5
rs10438340	15:32401406	T/C	CHRNA7	intron	0.975	0.98985	0.0132	0.4404		7
rs10438341	15:32401608	T/C	CHRNA7	intron	0.981	1.01319	0.0114	0.2492		5
rs10438342	15:32402046	A/G	CHRNA7	intron	0.993	0.98669	0.0113	0.2378		5
rs10459632	15:32428968	C/G	CHRNA7	intron	0.923	0.97726	0.0110	0.03653		6
rs10459633	15:32429000	A/G	CHRNA7	intron	0.744	0.98511	0.0126	0.2361		6
rs10468022	15:32423933	A/G	CHRNA7	intron	0.981	0.98246	0.0107	0.09736		6
rs10775173	15:32343377	T/C	CHRNA7	intron	0.725	1.00341	0.0161	0.834		5
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Showing 1 to 10 of 257 entries

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Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

Reference	Study type	Sample size
18668039	GWAS	Phase I: 1433 cases and 33250 controls; Phase II: 3285 cases and 7960 controls
18668038	GWAS	3391 cases; 3181 controls
19880096	GWAS	575 cases; 564 controls
21489405	GWAS	834 cases; 672 controls
19181681	GWAS	471 cases; 2792 controls
22118685	GWAS	235 cases; 191 controls
Reference	Study type	Sample size

eQTL Information