CHRNA5

Basic Information

Gene Symbol	CHRNA5
Entrez Id	1138
Position	chr15:78857862..78887611
Description	cholinergic receptor, nicotinic, alpha 5 (neuronal)
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs114570989	15:78872147	A/G	CHRNA5	intron	0.893	1.01816	0.0595	0.7619		7
rs116991229	15:78874555	T/C	CHRNA5	intron	0.710	0.86866	0.0487	0.003831		7
rs117994199	15:78859918	C/G	CHRNA5	intron	0.615	1.19017	0.0716	0.01506		5
rs12898919	15:78880577	C/G	CHRNA5	intron	0.986	1.02521	0.0256	0.3322		7
rs12901535	15:78884646	A/G	CHRNA5	intron	0.984	1.02532	0.0273	0.359		6
rs12903575	15:78881087	A/G	CHRNA5	intron	0.983	1.01908	0.0255	0.4585		7
rs12903839	15:78867042	C/G	CHRNA5	intron	0.971	0.98265	0.0253	0.49		7
rs12907994	15:78858750	C/G	CHRNA5	intron	0.966	0.97922	0.0258	0.4147		5
rs12908606	15:78858938	T/G	CHRNA5	intron	0.966	1.02122	0.0258	0.4154		5
rs12911436	15:78870188	A/G	CHRNA5	intron	0.953	1.02562	0.0246	0.3037		7
rs12911865	15:78856206	T/C	CHRNA5	near-gene-5	0.961	1.00924	0.0245	0.7092		6
rs12912321	15:78856323	A/G	CHRNA5	near-gene-5	0.963	1.00713	0.0244	0.7701		7
rs139622918	15:78876286	C/G	CHRNA5	intron	0.663	0.97541	0.0656	0.7037		-
rs140330585	15:78866445	A/G	CHRNA5	intron	1.000	1.05792	0.0113	6.793E-7		-
rs140339604	15:78858745	A/G	CHRNA5	intron	0.725	1.09439	0.0488	0.06457		-
rs142388711	15:78868070	T/G	CHRNA5	intron	0.682	0.99253	0.0572	0.8959		-
rs1700006	15:78875623	A/G	CHRNA5	intron	0.926	1.09308	0.0137	9.261E-11		5
rs1711731	15:78861918	A/G	CHRNA5	intron	0.916	0.91247	0.0138	3.384E-11		7
rs17486195	15:78865197	A/G	CHRNA5	intron	1.000	0.94516	0.0113	6.579E-7		6
rs17486278	15:78867482	A/C	CHRNA5	intron	1.000	0.95123	0.0111	6.48E-6		2b
rs190065944	15:78859610	A/G	CHRNA5	intron	0.727	1.07799	0.0139	7.221E-8		-
rs2229961	15:78880752	A/G	CHRNA5	missense	0.708	1.15050	0.0487	0.003997		7
rs2456019	15:78868489	T/G	CHRNA5	intron	0.941	1.00944	0.0112	0.4005		6
rs2456020	15:78868398	T/C	CHRNA5	intron	0.993	0.92395	0.0124	1.723E-10		6
rs3813569	15:78856166	T/C	CHRNA5	near-gene-5	0.606	1.02081	0.0518	0.6913		6
rs3829787	15:78856266	T/C	CHRNA5	near-gene-5	0.967	1.00662	0.0112	0.5574		7
rs481134	15:78877563	A/G	CHRNA5	intron	0.998	1.01420	0.0108	0.1921		6
rs495090	15:78870003	A/G	CHRNA5	intron	0.994	1.00975	0.0109	0.3758		5
rs495956	15:78869930	T/C	CHRNA5	intron	0.995	0.99045	0.0109	0.381		5
rs503464	15:78857896	A/T	CHRNA5	untranslated-5	0.955	0.93174	0.0125	1.697E-8		4
rs514743	15:78884227	A/T	CHRNA5	intron	0.995	0.98807	0.0110	0.2737		6
rs518425	15:78883813	A/G	CHRNA5	intron	0.996	1.07691	0.0118	3.235E-10		6
rs57945453	15:78862845	T/C	CHRNA5	intron	0.989	1.01136	0.0110	0.3044		7
rs588765	15:78865425	T/C	CHRNA5	intron	0.998	1.01359	0.0108	0.2096		7
rs61012457	15:78865694	C/G	CHRNA5	intron	0.993	0.98847	0.0110	0.293		5
rs637137	15:78873976	A/T	CHRNA5	intron	0.998	0.92450	0.0124	2.332E-10		6
rs647041	15:78880481	T/C	CHRNA5	intron	0.996	1.01481	0.0108	0.172		6
rs6495306	15:78865893	A/G	CHRNA5	intron	0.999	0.98610	0.0108	0.1941		6
rs667282	15:78863472	T/C	CHRNA5	intron	0.997	1.08058	0.0124	4.11E-10		5
rs692780	15:78876505	C/G	CHRNA5	intron	0.991	1.01116	0.0110	0.3133		7
rs7172118	15:78862453	A/C	CHRNA5	intron	0.999	1.05834	0.0113	5.822E-7		7
rs72740964	15:78868636	A/G	CHRNA5	intron	1.000	1.05802	0.0113	6.529E-7		6
rs76474922	15:78884553	A/C	CHRNA5	intron	0.840	1.07584	0.0218	0.0008023		7
rs871058	15:78858491	A/G	CHRNA5	intron	0.955	1.01319	0.0114	0.2521		4
rs951266	15:78878541	A/G	CHRNA5	intron	1.000	1.05792	0.0113	6.681E-7		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information