CHRNA3

Basic Information

Gene Symbol	CHRNA3
Entrez Id	1136
Position	chr15:78885394..78913637
Description	cholinergic receptor, nicotinic, alpha 3 (neuronal)
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs1051730	15:78894339	A/G	CHRNA3	coding-synon,ncRNA	1.000	1.05834	0.0113	5.503E-7		6
rs111725959	15:78899346	A/G	CHRNA3	intron	0.993	1.01136	0.0110	0.305		7
rs112272197	15:78892513	T/C	CHRNA3	intron	0.728	1.06801	0.0314	0.036		7
rs117287587	15:78900279	A/G	CHRNA3	intron	0.665	0.79215	0.0671	0.0005217		7
rs117832812	15:78912472	A/C	CHRNA3	intron,untranslated-5	0.806	0.93941	0.0231	0.006858		4
rs12443170	15:78907736	A/G	CHRNA3	intron	0.866	0.90556	0.0173	1.043E-8		5
rs12901300	15:78892952	A/G	CHRNA3	intron	0.997	1.01420	0.0108	0.1915		5
rs12904589	15:78897581	A/G	CHRNA3	intron	0.986	0.97103	0.0275	0.2846		7
rs12907519	15:78913044	T/C	CHRNA3	intron,near-gene-5	0.975	0.99940	0.0224	0.9783		5
rs12910984	15:78891627	A/G	CHRNA3	intron	0.999	1.08253	0.0124	1.46E-10		7
rs12911602	15:78891449	T/C	CHRNA3	intron	0.998	0.98521	0.0108	0.1665		6
rs12914385	15:78898723	T/C	CHRNA3	intron	0.998	1.05274	0.0108	2.152E-6		7
rs138544659	15:78900701	T/G	CHRNA3	intron	0.908	0.94092	0.0121	4.363E-7		-
rs139978901	15:78902026	A/C	CHRNA3	intron	0.935	1.00904	0.0113	0.4249		-
rs140788155	15:78911823	T/C	CHRNA3	intron	0.761	1.00150	0.0530	0.978		-
rs142617926	15:78901944	T/G	CHRNA3	intron	0.987	0.97511	0.0257	0.3271		-
rs145649011	15:78899996	T/C	CHRNA3	intron	0.750	0.97814	0.0467	0.6366		-
rs146009840	15:78906177	A/T	CHRNA3	intron	0.983	0.94582	0.0114	9.144E-7		-
rs147094383	15:78903997	T/G	CHRNA3	intron	0.850	1.01157	0.0122	0.3483		-
rs147144681	15:78900908	T/C	CHRNA3	intron	0.946	1.06812	0.0119	2.801E-8		-
rs183822442	15:78902775	A/G	CHRNA3	intron	0.977	0.98491	0.0109	0.1634		-
rs189218934	15:78903987	T/C	CHRNA3	intron	0.792	0.93258	0.0122	1.132E-8		-
rs189302121	15:78892421	A/T	CHRNA3	intron	0.700	0.95075	0.0313	0.1062		-
rs190245674	15:78913207	T/C	CHRNA3	near-gene-5,ncRNA,untranslated-5	0.656	0.99243	0.0506	0.8813		-
rs190259891	15:78902906	A/G	CHRNA3	intron	0.997	1.01298	0.0107	0.2274		-
rs2067808	15:78911780	A/G	CHRNA3	intron	0.982	1.00864	0.0110	0.4374		5
rs28669908	15:78910267	A/C	CHRNA3	intron	0.913	0.91001	0.0141	2.208E-11		5
rs28681284	15:78908565	T/C	CHRNA3	intron	0.919	0.90965	0.0139	8.602E-12		7
rs3825845	15:78910258	T/C	CHRNA3	intron	0.983	0.92219	0.0126	1.338E-10		5
rs41280050	15:78909557	A/G	CHRNA3	intron	0.642	0.81963	0.0790	0.01178		5
rs4243084	15:78911672	C/G	CHRNA3	intron	0.989	1.05043	0.0111	9.059E-6		5
rs4366683	15:78912203	T/C	CHRNA3	intron,untranslated-5	0.915	1.00170	0.0110	0.8747		5
rs4887069	15:78909070	A/G	CHRNA3	intron	0.976	1.08741	0.0125	1.826E-11		5
rs62010327	15:78892784	A/G	CHRNA3	intron	0.991	1.01390	0.0111	0.2132		5
rs62010328	15:78894971	T/C	CHRNA3	intron	0.991	1.01369	0.0111	0.2222		7
rs62010330	15:78905854	T/C	CHRNA3	intron	0.863	1.10318	0.0171	9.529E-9		6
rs62010331	15:78907696	A/C	CHRNA3	intron	0.653	0.95037	0.0645	0.4304		5
rs6495307	15:78890321	T/C	CHRNA3	intron	0.996	1.01461	0.0108	0.1789		7
rs6495308	15:78907656	T/C	CHRNA3	intron	1.000	1.09057	0.0124	2.949E-12		5
rs7177514	15:78907406	C/G	CHRNA3	intron	1.000	1.09013	0.0124	3.647E-12		5
rs7182583	15:78899210	C/G	CHRNA3	intron	0.993	1.01147	0.0110	0.2994		7
rs74386627	15:78908077	T/C	CHRNA3	intron	0.738	0.97677	0.0298	0.4299		6
rs76593333	15:78908768	T/C	CHRNA3	intron	0.759	0.93034	0.0704	0.3051		7
rs77403874	15:78903165	T/C	CHRNA3	intron	0.998	0.98600	0.0107	0.189		7
rs77438700	15:78906637	A/G	CHRNA3	intron	0.814	1.06983	0.0241	0.005149		5
rs8040544	15:78904261	A/G	CHRNA3	intron	0.874	1.01106	0.0121	0.362		7
rs8040868	15:78911181	T/C	CHRNA3	coding-synon,ncRNA,untranslated-5	0.991	0.95218	0.0108	5.395E-6		1f
rs8042059	15:78907859	A/C	CHRNA3	intron	1.000	1.09035	0.0124	3.346E-12		7
rs8042374	15:78908032	A/G	CHRNA3	intron	1.000	1.09144	0.0124	1.865E-12		7
rs8042494	15:78908010	T/C	CHRNA3	intron	0.999	0.92265	0.0124	7.589E-11		7
rs8043009	15:78908154	C/G	CHRNA3	intron	1.000	0.91686	0.0124	2.871E-12		6
rs8192475	15:78911230	T/C	CHRNA3	ncRNA,missense,untranslated-5	0.996	1.02296	0.0260	0.3812		4
rs8192477	15:78910463	C/G	CHRNA3	intron	0.939	0.93520	0.0124	6.486E-8		6
rs8192478	15:78910462	A/G	CHRNA3	intron	0.939	1.06951	0.0124	5.9E-8		6
rs8192479	15:78909398	T/C	CHRNA3	coding-synon,ncRNA	0.799	1.04540	0.0439	0.3121		5
rs938682	15:78896547	A/G	CHRNA3	intron	0.999	1.08101	0.0124	3.097E-10		6
rs9646187	15:78906128	A/C	CHRNA3	intron	0.891	1.01056	0.0114	0.355		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information