CHI3L1

Basic Information

Gene Symbol	CHI3L1
Entrez Id	1116
Position	chr1:203148059..203155922
Description	chitinase 3-like 1 (cartilage glycoprotein-39)
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10920578	1:203154094	T/C	CHI3L1	intron	0.959	0.99850	0.0108	0.893		6
rs111768615	1:203155412	A/G	CHI3L1	intron	0.830	1.06481	0.0412	0.1278		5
rs116995606	1:203149906	T/C	CHI3L1	intron	0.951	0.95409	0.0424	0.267		3a
rs12128727	1:203153555	T/C	CHI3L1	intron	0.966	0.99840	0.0107	0.878		1f
rs12141494	1:203151425	A/G	CHI3L1	intron	0.967	0.99730	0.0107	0.7998		5
rs12408583	1:203148360	A/G	CHI3L1	untranslated-3	0.935	0.93072	0.0458	0.1166		5
rs12409175	1:203155043	C/G	CHI3L1	intron	0.882	0.91539	0.0472	0.06096		5
rs12409713	1:203151794	C/G	CHI3L1	intron	0.935	1.00441	0.0367	0.9047		5
rs12410110	1:203152975	C/G	CHI3L1	intron	0.898	0.98491	0.0422	0.7187		5
rs12410262	1:203149211	T/G	CHI3L1	intron	0.951	1.04781	0.0424	0.2706		5
rs147271418	1:203152650	C/G	CHI3L1	intron	0.949	1.05022	0.0424	0.2471		-
rs1538372	1:203154532	A/G	CHI3L1	intron	0.954	1.01015	0.0113	0.3737		1f
rs2071579	1:203153634	C/G	CHI3L1	intron	0.967	1.00170	0.0107	0.8744		5
rs2071580	1:203149154	T/C	CHI3L1	intron	0.949	1.00783	0.0366	0.8308		5
rs2275351	1:203150073	T/C	CHI3L1	intron	0.962	0.98482	0.0147	0.2979		5
rs2275352	1:203150179	A/G	CHI3L1	intron	0.962	0.98472	0.0147	0.295		5
rs2275353	1:203150208	A/G	CHI3L1	intron	0.962	0.98452	0.0147	0.2911		5
rs2297838	1:203149376	A/C	CHI3L1	intron	0.954	0.98039	0.0146	0.1756		5
rs2297839	1:203152184	T/C	CHI3L1	intron	0.951	1.02439	0.0121	0.04674		4
rs2364572	1:203146586	A/G	CHI3L1	near-gene-5	0.852	0.97707	0.0303	0.4429		4
rs2364573	1:203146694	T/C	CHI3L1	near-gene-5	0.862	0.94942	0.0500	0.2995		4
rs35405821	1:203150899	C/G	CHI3L1	intron	0.962	1.00200	0.0108	0.8539		5
rs4950881	1:203155055	A/G	CHI3L1	intron	0.932	0.97824	0.0125	0.07848		5
rs880633	1:203152801	T/C	CHI3L1	missense	0.969	1.00160	0.0107	0.8794		5
rs883125	1:203146166	C/G	CHI3L1	near-gene-5	0.923	1.01755	0.0146	0.2329		4
rs903359	1:203146749	T/G	CHI3L1	near-gene-5	0.861	0.95973	0.0196	0.03635		2b
rs946259	1:203152177	T/C	CHI3L1	intron	0.968	0.99800	0.0107	0.8547		4
rs946260	1:203152320	A/G	CHI3L1	intron	0.921	1.02798	0.0223	0.2164		4
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information