Gene Symbol | CHGA |
---|---|
Entrez Id | 1113 |
Position | chr14:93389445..93401638 |
Description | chromogranin A |
Gene type | protein-coding |
SNP | Position | Alelle | Gene | Annotation | Info | Or | Se | P-value | eQTL | Score* |
---|---|---|---|---|---|---|---|---|---|---|
rs111574060 | 14:93402915 | T/G | CHGA | near-gene-3 | 0.706 | 1.07229 | 0.0485 | 0.1506 | ![]() | 7 |
rs117159188 | 14:93402836 | T/C | CHGA | near-gene-3 | 0.871 | 0.95256 | 0.0363 | 0.1808 | ![]() | 5 |
rs11851859 | 14:93398144 | A/G | CHGA | intron | 0.949 | 1.01329 | 0.0131 | 0.3133 | ![]() | 5 |
rs12878661 | 14:93400554 | A/G | CHGA | intron | 0.947 | 0.98896 | 0.0123 | 0.369 | ![]() | 5 |
rs12878823 | 14:93400616 | A/G | CHGA | intron | 0.953 | 1.00612 | 0.0113 | 0.5924 | ![]() | 5 |
rs143813987 | 14:93394175 | A/G | CHGA | intron | 0.910 | 0.97922 | 0.0277 | 0.4484 | ![]() | - |
rs144938064 | 14:93395465 | A/G | CHGA | intron | 0.857 | 1.04865 | 0.0439 | 0.2797 | ![]() | - |
rs185397045 | 14:93389965 | T/C | CHGA | intron | 0.885 | 1.05802 | 0.0333 | 0.09047 | ![]() | - |
rs2236132 | 14:93398670 | T/C | CHGA | intron | 0.891 | 1.01359 | 0.0210 | 0.5185 | ![]() | 5 |
rs2295395 | 14:93395407 | A/G | CHGA | intron | 0.968 | 1.00864 | 0.0120 | 0.4747 | ![]() | 5 |
SNP | Position | Alelle | Gene | Annotation | Info | Or | Se | P-value | eQTL | Score* |
score | supporting data | score | supporting data |
---|---|---|---|
1a | eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak | 6 | other |
2a | TF binding + matched TF motif + matched DNase Footprint + DNase peak | 5 | TF binding or DNase peak |
1b | eQTL + TF binding + any motif + DNase Footprint + DNase peak | 4 | TF binding + DNase peak |
2b | TF binding + any motif + DNase Footprint + DNase peak | 3b | TF binding + matched TF motif |
1c | eQTL + TF binding + matched TF motif + DNase peak | 1f | eQTL + TF binding / DNase peak |
2c | TF binding + matched TF motif + DNase peak | 3a | TF binding + any motif + DNase peak |
1d | eQTL + TF binding + any motif + DNase peak | 1e | eQTL + TF binding + matched TF motif |
The gene is not affected by CNV!