CD46

Basic Information

Gene Symbol	CD46
Entrez Id	4179
Position	chr1:207925383..207968861
Description	CD46 molecule, complement regulatory protein
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10449303	1:207961058	A/G	CD46	intron	0.998	1.04331	0.0110	0.0001203		6
rs10746399	1:207944072	T/C	CD46	intron	0.974	0.96252	0.0110	0.0005382		7
rs11118514	1:207924271	C/G	CD46	near-gene-5	0.988	0.93622	0.0228	0.003856		5
rs11118516	1:207929340	A/G	CD46	intron	0.958	1.02000	0.0200	0.3216		5
rs11118555	1:207940853	A/T	CD46	intron	0.994	0.96425	0.0168	0.02998		5
rs11118556	1:207943178	A/G	CD46	intron	0.958	1.01898	0.0200	0.3473		6
rs11118557	1:207944114	A/G	CD46	intron	0.958	0.93885	0.0218	0.003728		7
rs11118580	1:207959070	T/C	CD46	intron	0.986	1.05285	0.0133	0.000106		5
rs111750965	1:207943211	A/G	CD46	intron	0.776	1.07240	0.0406	0.0854		6
rs113536382	1:207966403	C/G	CD46	intron	0.620	0.95247	0.0546	0.3728		5
rs114064385	1:207960359	C/G	CD46	intron	0.718	1.02891	0.0555	0.6072		5
rs114776475	1:207949828	A/T	CD46	intron	0.986	1.04666	0.0220	0.03836		6
rs115323291	1:207955535	A/T	CD46	intron	0.977	1.05739	0.0399	0.1613		6
rs115906510	1:207955963	A/G	CD46	intron	0.924	1.03552	0.0214	0.1036		7
rs11806810	1:207958094	C/G	CD46	intron	0.966	1.05496	0.0216	0.01339		5
rs12067460	1:207930167	A/T	CD46	intron	0.971	1.01908	0.0489	0.6991		6
rs12081450	1:207956138	A/G	CD46	intron	0.926	1.00773	0.0474	0.8706		7
rs12086137	1:207956140	A/G	CD46	intron	0.858	1.02368	0.0304	0.4402		7
rs12138764	1:207950746	T/C	CD46	intron	0.958	1.01918	0.0200	0.3417		7
rs12568382	1:207966393	A/G	CD46	intron	0.993	0.96108	0.0167	0.01769		5
rs138685460	1:207945712	T/C	CD46	intron	0.985	0.96175	0.0111	0.0004325		-
rs139307965	1:207926862	A/G	CD46	intron	0.996	0.95993	0.0216	0.05888		-
rs139934838	1:207927075	A/G	CD46	intron	0.625	0.94092	0.0639	0.3404		-
rs142585037	1:207966716	A/G	CD46	intron	0.794	1.05527	0.0423	0.203		-
rs147925388	1:207961812	A/G	CD46	intron	0.797	1.07304	0.0482	0.1437		-
rs150315189	1:207924840	A/G	CD46	near-gene-5	0.621	0.97307	0.0645	0.6727		-
rs180992260	1:207932207	A/C	CD46	intron	0.810	1.09483	0.0496	0.06752		-
rs188348932	1:207961789	T/C	CD46	intron	0.840	0.99124	0.0455	0.8463		-
rs190409727	1:207949997	T/C	CD46	intron	0.740	0.96474	0.0419	0.3923		-
rs191987769	1:207949698	A/G	CD46	intron	0.976	1.05633	0.0398	0.1684		-
rs1962149	1:207956559	A/G	CD46	intron	0.996	0.96002	0.0110	0.0002179		7
rs1970530	1:207924066	A/G	CD46	near-gene-5	0.996	1.04071	0.0110	0.0002912		4
rs2466571	1:207940046	T/G	CD46	intron	0.997	1.02439	0.0107	0.02459		5
rs2466572	1:207934487	A/C	CD46	intron	0.984	0.95190	0.0132	0.0002004		7
rs2488252	1:207938228	T/C	CD46	intron	0.996	1.03977	0.0110	0.0003982		6
rs2488253	1:207938709	A/C	CD46	intron	0.998	1.03967	0.0110	0.0004091		7
rs2488254	1:207941539	A/G	CD46	intron	0.998	0.96146	0.0110	0.0003611		7
rs2488255	1:207941741	T/C	CD46	intron	0.997	1.03987	0.0110	0.0003792		5
rs2488259	1:207956057	A/G	CD46	intron	0.848	1.02041	0.0114	0.07713		7
rs2724359	1:207935706	A/G	CD46	intron	0.998	0.96137	0.0110	0.0003501		7
rs2724360	1:207943158	T/C	CD46	intron	0.981	1.05022	0.0132	0.0002104		7
rs2724361	1:207944959	T/C	CD46	intron	0.994	1.04019	0.0110	0.0003544		7
rs2724374	1:207941191	T/G	CD46	intron	0.977	1.05012	0.0132	0.0002213		7
rs2724380	1:207949682	T/C	CD46	intron	0.997	1.03967	0.0110	0.0004132		7
rs2724381	1:207949017	T/C	CD46	intron	0.997	0.96165	0.0110	0.0003852		5
rs2724382	1:207928635	C/G	CD46	intron	0.997	1.03998	0.0110	0.0003685		5
rs2724383	1:207930029	A/G	CD46	intron	0.997	0.96127	0.0110	0.0003365		7
rs2724384	1:207930203	A/G	CD46	intron	0.984	1.05085	0.0132	0.0001812		7
rs2724385	1:207931528	A/T	CD46	intron	0.997	1.02163	0.0107	0.04525		7
rs2724386	1:207931687	A/G	CD46	intron	0.997	1.02163	0.0107	0.04522		3a
rs2724387	1:207932617	T/G	CD46	intron	0.998	0.96175	0.0110	0.0003949		5
rs2724388	1:207933577	T/G	CD46	intron	0.993	0.96012	0.0110	0.0002297		6
rs2724389	1:207933648	T/C	CD46	intron	0.997	0.96127	0.0110	0.0003351		6
rs2724391	1:207953244	T/C	CD46	intron	0.996	0.96204	0.0110	0.0004346		7
rs2796267	1:207924906	A/G	CD46	near-gene-5	0.980	1.04342	0.0109	0.00009352		2b
rs2796268	1:207925192	A/G	CD46	near-gene-5	0.996	1.03904	0.0110	0.0004811		2b
rs2796269	1:207936886	T/C	CD46	intron	0.990	0.99910	0.0114	0.9407		7
rs2796270	1:207937612	A/G	CD46	intron	0.990	1.02010	0.0108	0.06427		4
rs2796271	1:207941927	A/G	CD46	intron	0.998	0.96175	0.0110	0.0004007		5
rs2796272	1:207943112	T/C	CD46	intron	0.886	1.04655	0.0113	0.00005812		6
rs2796273	1:207944853	T/C	CD46	intron	0.995	0.97902	0.0107	0.0475		7
rs2796275	1:207950490	T/C	CD46	intron	0.996	1.05506	0.0115	2.853E-6		7
rs2796276	1:207951513	A/G	CD46	intron	0.996	1.03967	0.0110	0.000416		7
rs2796278	1:207955823	A/C	CD46	intron	0.984	0.97677	0.0106	0.02736		7
rs3109808	1:207948477	A/C	CD46	intron	0.996	1.03873	0.0110	0.0005328		7
rs35029161	1:207927153	T/C	CD46	intron	0.976	1.03593	0.0164	0.03106		5
rs35118522	1:207948061	T/C	CD46	intron	0.992	1.03697	0.0167	0.03015		7
rs35366573	1:207958446	T/C	CD46	missense	0.789	0.96137	0.0385	0.3068		7
rs35677203	1:207931996	A/T	CD46	intron	0.782	1.02778	0.0211	0.1947		6
rs41258244	1:207934553	A/T	CD46	intron	0.996	0.96012	0.0216	0.05997		7
rs41266397	1:207925361	C/G	CD46	near-gene-5	0.989	0.96108	0.0218	0.06838		2a
rs41268335	1:207926275	C/G	CD46	intron	0.996	1.04175	0.0216	0.05878		4
rs41316817	1:207927231	C/G	CD46	intron	0.996	1.04164	0.0216	0.05899		3a
rs41316821	1:207927382	C/G	CD46	intron	0.996	1.04164	0.0216	0.059		7
rs41316827	1:207927624	A/C	CD46	intron	0.779	1.06364	0.0404	0.1268		4
rs41317049	1:207930023	T/G	CD46	intron	0.951	0.97395	0.0159	0.09813		7
rs41317067	1:207931806	A/G	CD46	intron	0.831	0.98275	0.0463	0.7072		2c
rs41317081	1:207933353	A/G	CD46	intron	0.979	1.08480	0.0248	0.001031		7
rs41317815	1:207940067	T/C	CD46	intron	0.706	1.00140	0.0457	0.9762		5
rs41317829	1:207942526	C/G	CD46	intron	0.780	0.93988	0.0403	0.1245		7
rs41317831	1:207943164	C/G	CD46	intron	0.602	0.95313	0.0384	0.2111		7
rs41317835	1:207950930	A/G	CD46	intron	0.994	1.04112	0.0217	0.06278		6
rs41317949	1:207953199	A/C	CD46	intron	0.994	1.04112	0.0217	0.06325		7
rs41317951	1:207953489	A/C	CD46	intron	0.931	1.02071	0.0203	0.3139		7
rs41317975	1:207957493	T/G	CD46	intron	0.991	0.96079	0.0219	0.06708		6
rs41317983	1:207959659	A/G	CD46	intron	0.992	0.96098	0.0219	0.06897		7
rs41317993	1:207961732	A/G	CD46	intron	0.937	0.96474	0.0182	0.04898		7
rs41318003	1:207964865	T/C	CD46	intron	0.996	1.03915	0.0219	0.0796		5
rs41318007	1:207965852	C/G	CD46	intron	0.827	0.98718	0.0463	0.7802		6
rs4844390	1:207934849	A/G	CD46	intron	0.989	1.05190	0.0133	0.000137		7
rs4844619	1:207960708	T/C	CD46	intron	0.988	0.95085	0.0133	0.000147		7
rs6657476	1:207960104	T/G	CD46	intron	0.988	0.95094	0.0133	0.0001478		6
rs74553492	1:207927035	A/C	CD46	intron	0.652	0.97560	0.0566	0.6622		5
rs74856817	1:207955694	C/G	CD46	intron	0.993	0.95983	0.0218	0.0596		7
rs74941188	1:207927732	C/G	CD46	intron	0.765	0.91192	0.0429	0.03147		7
rs75165547	1:207962178	T/G	CD46	intron	0.996	0.96204	0.0219	0.0769		6
rs859705	1:207959665	A/G	CD46	intron	0.995	0.96012	0.0110	0.0002122		7
rs859706	1:207962270	A/G	CD46	intron	0.998	0.95973	0.0110	0.0001798		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information