C3

Basic Information

Gene Symbol	C3
Entrez Id	718
Position	chr19:6677846..6720662
Description	complement component 3
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10221476	19:6699274	T/C	C3	intron	0.967	0.98393	0.0111	0.1446		7
rs10402876	19:6695001	C/G	C3	intron	0.915	0.99213	0.0111	0.4772		6
rs10403713	19:6694116	T/G	C3	intron	0.784	1.00541	0.0129	0.6728		3a
rs10406463	19:6695514	A/G	C3	intron	0.906	1.00904	0.0113	0.4245		7
rs10408682	19:6699330	T/C	C3	intron	0.984	1.00914	0.0154	0.5576		7
rs10410674	19:6696178	A/G	C3	intron	0.921	0.99283	0.0111	0.516		6
rs10411506	19:6710948	A/G	C3	intron	0.833	1.00000	0.0159	0.9999		5
rs10411974	19:6696044	A/C	C3	intron	0.759	0.98679	0.0190	0.4831		7
rs10414623	19:6693163	A/G	C3	intron	0.897	0.99243	0.0216	0.7241		2a
rs10415542	19:6699569	T/C	C3	intron	0.958	1.01633	0.0125	0.1969		5
rs11085192	19:6689065	T/C	C3	intron	0.966	1.00150	0.0109	0.8924		5
rs11085194	19:6693571	T/C	C3	intron	0.941	0.99402	0.0111	0.5898		6
rs11085195	19:6704670	T/C	C3	intron	0.787	0.99900	0.0175	0.9564		6
rs11085196	19:6708820	A/C	C3	intron	0.797	0.99750	0.0133	0.8534		5
rs11085197	19:6713175	C/G	C3	intron	0.836	1.01045	0.0149	0.4856		4
rs11085199	19:6715212	T/G	C3	intron	0.730	0.99900	0.0174	0.9552		7
rs112347600	19:6692045	A/T	C3	intron	0.987	0.99661	0.0157	0.8278		6
rs113968853	19:6714798	A/G	C3	intron	0.729	0.99780	0.0174	0.9008		5
rs11569393	19:6721640	A/C	C3	near-gene-5	0.823	0.99372	0.0118	0.5935		3a
rs11569494	19:6692512	T/C	C3	intron	0.990	0.99750	0.0158	0.8749		7
rs11569547	19:6683622	T/C	C3	intron	0.753	1.00341	0.0299	0.9094		7
rs11569558	19:6679773	T/C	C3	intron	0.915	0.98689	0.0280	0.6374		5
rs11570240	19:6694257	T/G	C3	intron	0.703	1.04582	0.0459	0.3292		3a
rs116528507	19:6710145	C/G	C3	intron	0.838	0.99671	0.0159	0.837		5
rs11665922	19:6686578	A/G	C3	intron	0.809	1.00411	0.0383	0.9156		4
rs117525201	19:6719527	A/G	C3	intron	0.737	0.92700	0.0638	0.2346		4
rs117799383	19:6700329	A/C	C3	intron	0.828	1.00753	0.0116	0.5184		6
rs141412883	19:6689346	A/C	C3	intron	0.768	0.99054	0.0134	0.4772		-
rs142407097	19:6705200	C/G	C3	intron	0.637	0.94999	0.0554	0.3539		-
rs142473167	19:6689350	A/C	C3	intron	0.695	0.97902	0.0157	0.1755		-
rs143225151	19:6721741	T/C	C3	near-gene-5	0.622	0.98936	0.0623	0.864		-
rs144643540	19:6709875	T/C	C3	intron	0.703	1.06428	0.0441	0.1582		-
rs17626094	19:6722044	A/G	C3	near-gene-5	0.727	1.04582	0.0306	0.1428		4
rs181247165	19:6692022	C/G	C3	intron	0.820	0.98669	0.0205	0.512		-
rs185685811	19:6700441	A/G	C3	intron	0.605	0.97511	0.0433	0.5613		-
rs188377664	19:6700442	T/G	C3	intron	0.602	0.98472	0.0238	0.519		-
rs192942944	19:6702463	A/G	C3	intron	0.631	1.00904	0.0539	0.8679		-
rs2230199	19:6718387	C/G	C3	missense	0.856	1.01898	0.0147	0.2023		5
rs2230201	19:6713291	T/C	C3	coding-synon	0.812	1.00471	0.0151	0.7537		5
rs2230203	19:6710782	T/G	C3	coding-synon	0.836	1.02102	0.0155	0.1794		3a
rs2230204	19:6709848	T/C	C3	coding-synon	0.831	0.99641	0.0126	0.7765		5
rs2230205	19:6709704	T/C	C3	coding-synon	0.844	0.99372	0.0159	0.6909		5
rs2241389	19:6693317	A/G	C3	intron	0.988	1.00300	0.0158	0.8505		5
rs2241390	19:6693240	A/G	C3	intron	0.989	1.00280	0.0158	0.8587		3a
rs2241391	19:6686504	T/C	C3	intron	0.601	0.94724	0.0495	0.2736		4
rs2241392	19:6685983	C/G	C3	intron	0.968	0.98541	0.0111	0.1863		6
rs2241393	19:6685304	C/G	C3	intron	0.867	0.99621	0.0116	0.7468		7
rs2241394	19:6685230	C/G	C3	intron	0.889	0.99531	0.0164	0.7748		7
rs2250656	19:6718534	T/C	C3	intron	0.882	1.00040	0.0125	0.9769		5
rs2253756	19:6696699	A/G	C3	intron	0.976	0.98373	0.0111	0.1377		7
rs2270520	19:6719666	A/G	C3	intron	0.756	0.99054	0.0152	0.5298		5
rs2277982	19:6679645	T/C	C3	intron	0.894	1.01379	0.0292	0.6397		5
rs2277983	19:6679563	T/C	C3	intron	0.963	1.00140	0.0108	0.8931		5
rs2277984	19:6679511	T/C	C3	intron	0.972	1.00180	0.0107	0.8664		5
rs2287845	19:6696597	A/G	C3	intron	0.976	0.98373	0.0111	0.1375		7
rs2287846	19:6696557	C/G	C3	intron	0.975	1.01664	0.0111	0.1351		5
rs2287847	19:6696496	T/C	C3	intron	0.975	1.01542	0.0125	0.221		5
rs2287848	19:6696342	A/G	C3	intron	0.973	1.01715	0.0111	0.1247		7
rs2355316	19:6696789	A/G	C3	intron	0.977	0.98383	0.0111	0.1397		7
rs237554	19:6686659	T/C	C3	intron	0.940	1.01532	0.0160	0.3395		7
rs2547436	19:6701677	A/G	C3	intron	0.974	0.98511	0.0110	0.1745		7
rs2547438	19:6718078	T/G	C3	intron	0.866	0.99551	0.0134	0.7373		5
rs2642196	19:6717934	T/C	C3	intron	0.804	0.98551	0.0218	0.5037		2b
rs2642207	19:6701890	A/C	C3	intron	0.978	1.01461	0.0110	0.1885		6
rs2642208	19:6701738	A/G	C3	intron	0.968	0.98491	0.0111	0.1697		6
rs2642209	19:6701680	T/C	C3	intron	0.978	0.98511	0.0110	0.1747		7
rs34081046	19:6681630	T/C	C3	intron	0.958	1.00341	0.0108	0.7504		6
rs344538	19:6688014	T/C	C3	intron	0.995	1.00612	0.0111	0.584		7
rs35162257	19:6700728	A/G	C3	intron	0.953	0.98639	0.0112	0.2194		6
rs366510	19:6697829	T/G	C3	intron	0.979	0.98373	0.0110	0.1372		5
rs385791	19:6694399	A/G	C3	intron	0.709	0.95085	0.0451	0.2635		5
rs389404	19:6693387	A/G	C3	intron	0.978	0.99920	0.0156	0.9611		5
rs392690	19:6701635	A/G	C3	intron	0.960	1.01542	0.0111	0.1692		6
rs405566	19:6691085	A/G	C3	intron	0.975	0.99980	0.0158	0.9884		6
rs406514	19:6702598	A/G	C3	intron	0.980	0.98403	0.0125	0.198		5
rs408004	19:6696835	A/G	C3	intron	0.977	0.98383	0.0111	0.1404		7
rs408290	19:6702022	C/G	C3	intron	0.978	0.98501	0.0110	0.1728		6
rs421147	19:6691424	T/G	C3	intron	0.985	1.00150	0.0155	0.9228		6
rs432823	19:6702246	T/C	C3	intron	0.978	1.01440	0.0110	0.1939		7
rs433594	19:6702042	A/G	C3	intron	0.978	1.01461	0.0110	0.1891		7
rs436041	19:6692796	C/G	C3	intron	0.981	0.99900	0.0156	0.9477		7
rs445954	19:6696922	T/G	C3	intron	0.697	0.99910	0.0129	0.9428		7
rs4807895	19:6711958	A/G	C3	intron	0.830	0.99412	0.0123	0.6317		2b
rs594974	19:6698427	A/T	C3	intron	0.978	0.98482	0.0125	0.2202		5
rs62125100	19:6680729	A/G	C3	intron	0.778	0.95113	0.0546	0.3591		5
rs62125104	19:6700226	T/G	C3	intron	0.908	1.01167	0.0113	0.3035		6
rs6417195	19:6690461	A/G	C3	intron	0.948	0.99442	0.0110	0.6141		5
rs7257062	19:6685945	T/C	C3	intron	0.979	0.99581	0.0108	0.6979		7
rs7258241	19:6711689	A/T	C3	intron	0.763	0.98551	0.0168	0.3873		2b
rs75880055	19:6718928	A/G	C3	intron	0.720	0.98985	0.0160	0.5238		4
rs77344981	19:6692145	T/C	C3	intron	0.991	1.00230	0.0158	0.8832		7
rs79434713	19:6700982	A/C	C3	intron	0.675	1.02829	0.0332	0.3994		6
rs8102618	19:6700340	T/G	C3	intron	0.763	1.01238	0.0121	0.3105		6
rs8107911	19:6706041	A/G	C3	intron	0.950	0.98383	0.0127	0.2003		3a
rs8108377	19:6688860	A/C	C3	intron	0.967	0.99940	0.0109	0.9556		4
rs8112351	19:6706298	T/C	C3	intron	0.943	1.01623	0.0128	0.2073		2b
rs9710242	19:6699312	T/C	C3	intron	0.884	0.98768	0.0140	0.3768		7
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information