C1orf54

Basic Information

Gene Symbol	C1orf54
Entrez Id	79630
Position	chr1:150245183..150253335
Description	chromosome 1 open reading frame 54
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10157197	1:150250636	A/G	C1orf54	intron	0.996	1.02768	0.0108	0.01164		6
rs10494266	1:150245552	A/G	C1orf54	intron	0.964	0.98000	0.0158	0.2004		6
rs10788873	1:150250534	A/T	C1orf54	intron	0.995	0.99362	0.0106	0.547		7
rs113350564	1:150246996	T/C	C1orf54	intron	0.774	0.98787	0.0444	0.7839		5
rs113775984	1:150247451	A/T	C1orf54	intron	0.863	1.08611	0.0166	6.499E-7		6
rs116349314	1:150248767	A/T	C1orf54	intron	0.823	0.97151	0.0261	0.268		7
rs12138787	1:150246070	T/C	C1orf54	intron	0.989	1.09068	0.0167	2E-7		1f
rs139708128	1:150245082	A/G	C1orf54	intron,near-gene-5	0.658	0.99322	0.0437	0.8757		-
rs34755378	1:150242340	A/G	C1orf54	near-gene-5	0.979	0.91466	0.0168	1.036E-7		6
rs4926418	1:150247747	A/T	C1orf54	intron	0.842	0.98531	0.0132	0.263		6
rs6676685	1:150247311	A/C	C1orf54	intron	0.981	1.01136	0.0106	0.287		6
rs72694993	1:150242604	A/C	C1orf54	near-gene-5	0.979	1.09308	0.0168	1.096E-7		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information