ATPAF2

Basic Information

Gene Symbol	ATPAF2
Entrez Id	91647
Position	chr17:17921334..17942480
Description	ATP synthase mitochondrial F1 complex assembly factor 2
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs113983184	17:17923782	T/C	ATPAF2	intron,near-gene-3	0.818	0.96156	0.0368	0.2864		5
rs114743314	17:17922215	T/C	ATPAF2	intron	0.912	1.07519	0.0360	0.04431		7
rs11652819	17:17922161	T/C	ATPAF2	intron	0.970	0.99730	0.0281	0.9227		6
rs143444156	17:17936958	C/G	ATPAF2	intron	0.805	0.97113	0.0571	0.6075		-
rs17731621	17:17928925	T/C	ATPAF2	intron	0.600	0.99302	0.0714	0.9218		5
rs28555361	17:17934026	C/G	ATPAF2	intron	0.959	0.94007	0.0117	1.139E-7		7
rs2955377	17:17932818	A/G	ATPAF2	intron	1.000	1.06364	0.0114	5.675E-8		7
rs2955378	17:17930253	A/G	ATPAF2	intron	1.000	1.06439	0.0114	3.944E-8		6
rs2955384	17:17939573	A/G	ATPAF2	intron	1.000	1.06492	0.0114	3.057E-8		4
rs2955385	17:17939247	T/C	ATPAF2	intron	1.000	1.06407	0.0114	4.626E-8		4
rs33997182	17:17921995	T/C	ATPAF2	coding-synon	0.971	0.99810	0.0285	0.9473		7
rs34673242	17:17921698	A/G	ATPAF2	untranslated-3	0.977	0.99134	0.0257	0.7363		5
rs77426647	17:17924136	T/G	ATPAF2	intron,untranslated-3	0.892	1.08850	0.0305	0.005411		6
rs78758528	17:17926018	T/C	ATPAF2	intron	0.854	0.94026	0.0342	0.07174		6
rs79741613	17:17924903	T/C	ATPAF2	intron	0.970	0.99690	0.0283	0.914		3b
rs80251201	17:17932008	A/G	ATPAF2	intron	0.972	0.94233	0.0170	0.0004803		5
rs8069811	17:17922280	A/G	ATPAF2	intron	1.000	1.06577	0.0114	2.229E-8		7
rs8079418	17:17924060	T/C	ATPAF2	intron,untranslated-3	0.994	1.05717	0.0110	3.909E-7		7
rs9896837	17:17924868	A/G	ATPAF2	intron	1.000	0.94035	0.0114	6.247E-8		4
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information