ALDH1A1

Basic Information

Gene Symbol	ALDH1A1
Entrez Id	216
Position	chr9:75515578..75568233
Description	aldehyde dehydrogenase 1 family, member A1
Gene type	protein-coding

SNP Information

SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*
rs10781106	9:75522922	A/G	ALDH1A1	intron	0.968	0.99631	0.0107	0.7319		7
rs111871471	9:75518227	T/C	ALDH1A1	intron	0.917	0.92608	0.0531	0.1479		5
rs113703141	9:75524102	A/C	ALDH1A1	intron	0.975	1.07229	0.0346	0.04366		7
rs1330282	9:75530782	T/C	ALDH1A1	intron	0.983	1.02768	0.0251	0.2768		6
rs1330285	9:75557728	A/G	ALDH1A1	intron	0.988	1.07176	0.0438	0.1136		7
rs145023105	9:75527344	A/G	ALDH1A1	intron	0.725	1.13871	0.0583	0.026		-
rs146336531	9:75560075	A/T	ALDH1A1	intron	0.916	1.00813	0.0472	0.8632		-
rs149180463	9:75553583	A/G	ALDH1A1	intron	1.000	0.99950	0.0205	0.9811		-
rs17058224	9:75522835	A/C	ALDH1A1	intron	0.964	1.02788	0.0256	0.2835		6
rs17648566	9:75565718	T/C	ALDH1A1	intron	0.820	1.06471	0.0372	0.0916		5
rs2161811	9:75540187	A/G	ALDH1A1	intron	0.997	0.99372	0.0105	0.551		5
rs2210103	9:75552133	A/G	ALDH1A1	intron	0.977	0.99342	0.0118	0.5791		7
rs2288087	9:75544038	A/T	ALDH1A1	intron	0.999	0.99422	0.0105	0.5803		6
rs2303317	9:75541942	T/G	ALDH1A1	intron	0.998	1.00582	0.0105	0.5816		7
rs2309779	9:75559038	C/G	ALDH1A1	intron	0.996	1.00894	0.0114	0.4333		4
rs2773806	9:75551300	T/C	ALDH1A1	intron	0.982	1.04865	0.0302	0.1154		7
rs348445	9:75568803	A/G	ALDH1A1	near-gene-5	0.992	1.02214	0.0297	0.4603		6
rs348450	9:75554224	T/C	ALDH1A1	intron	0.993	0.97521	0.0297	0.3986		7
rs34878833	9:75541227	A/G	ALDH1A1	intron	0.835	1.00592	0.0314	0.8498		6
rs3780833	9:75524229	T/C	ALDH1A1	intron	0.969	1.00341	0.0107	0.7486		5
rs3815836	9:75545638	A/C	ALDH1A1	intron	0.997	0.99402	0.0105	0.5662		7
rs3909559	9:75559569	T/G	ALDH1A1	intron	0.997	0.99551	0.0107	0.675		6
rs4237253	9:75544932	T/C	ALDH1A1	intron	0.998	1.00602	0.0105	0.57		6
rs4237254	9:75545060	T/G	ALDH1A1	intron	0.995	1.00060	0.0106	0.9563		5
rs4237255	9:75545140	T/G	ALDH1A1	intron	0.997	1.00682	0.0105	0.5161		5
rs4567103	9:75565006	A/T	ALDH1A1	intron	0.993	0.97785	0.0297	0.4511		3a
rs4646543	9:75545456	T/C	ALDH1A1	intron	0.998	0.99392	0.0105	0.5639		7
rs4646547	9:75517582	A/C	ALDH1A1	intron	0.970	0.99045	0.0107	0.3715		7
rs4744674	9:75530921	C/G	ALDH1A1	intron	0.990	1.00692	0.0106	0.5133		3a
rs62560417	9:75557983	A/G	ALDH1A1	intron	0.820	1.04237	0.0241	0.08563		7
rs62560418	9:75558434	T/C	ALDH1A1	intron	0.756	0.94933	0.0400	0.1933		5
rs647880	9:75559818	T/C	ALDH1A1	intron	0.997	1.00914	0.0114	0.4264		6
rs7027604	9:75554952	A/C	ALDH1A1	intron	0.996	0.98876	0.0106	0.2878		7
rs7043217	9:75542895	A/G	ALDH1A1	intron	0.996	0.99910	0.0106	0.9343		7
rs71507823	9:75536733	T/C	ALDH1A1	intron	0.880	0.96967	0.0301	0.3053		6
rs722921	9:75544299	A/T	ALDH1A1	intron	0.998	1.00481	0.0105	0.6491		6
rs73488117	9:75548999	A/G	ALDH1A1	intron	0.988	1.07648	0.0344	0.03235		5
rs73490319	9:75559379	A/C	ALDH1A1	intron	0.987	0.93398	0.0439	0.1195		7
rs77434450	9:75543253	T/C	ALDH1A1	intron	0.992	0.92904	0.0343	0.03198		6
rs77607043	9:75548436	C/G	ALDH1A1	intron	0.884	1.04844	0.0242	0.05109		6
rs77722987	9:75520459	T/C	ALDH1A1	intron	0.960	0.97424	0.0257	0.3097		7
rs78094588	9:75540815	A/G	ALDH1A1	intron	0.983	1.02798	0.0365	0.4492		7
rs80105873	9:75557372	T/G	ALDH1A1	intron	0.756	0.94942	0.0400	0.1946		6
rs8187876	9:75564954	T/C	ALDH1A1	intron	0.968	0.98936	0.0201	0.5932		4
rs8187877	9:75564826	T/C	ALDH1A1	intron	0.790	1.02840	0.0535	0.6001		5
rs8187884	9:75561786	A/C	ALDH1A1	intron	1.000	1.00280	0.0205	0.8902		7
rs8187887	9:75560866	T/G	ALDH1A1	intron	1.000	0.99960	0.0205	0.9835		7
rs8187889	9:75560001	A/G	ALDH1A1	intron	0.907	1.01349	0.0255	0.599		5
rs8187890	9:75559849	T/C	ALDH1A1	intron	1.000	1.00020	0.0205	0.992		5
rs8187891	9:75559104	T/C	ALDH1A1	intron	0.792	1.01248	0.0374	0.7395		5
rs8187893	9:75558799	T/C	ALDH1A1	intron	0.988	1.07133	0.0438	0.1159		7
rs8187895	9:75556909	A/G	ALDH1A1	intron	1.000	0.99970	0.0205	0.9864		5
rs8187896	9:75555531	T/C	ALDH1A1	intron	0.884	0.99930	0.0467	0.988		7
rs8187897	9:75552989	C/G	ALDH1A1	intron	0.951	0.99154	0.0359	0.8123		5
rs8187898	9:75552675	T/C	ALDH1A1	intron	0.965	1.03935	0.0348	0.2682		2b
rs8187902	9:75551996	T/C	ALDH1A1	intron	0.991	0.92951	0.0344	0.03382		7
rs8187906	9:75550794	T/C	ALDH1A1	intron	0.989	1.07530	0.0345	0.03498		6
rs8187910	9:75549810	T/C	ALDH1A1	intron	0.995	0.99273	0.0178	0.6838		7
rs8187919	9:75544797	A/G	ALDH1A1	intron	0.991	1.07251	0.0340	0.0397		7
rs8187924	9:75543243	A/G	ALDH1A1	intron	0.998	1.00592	0.0105	0.5762		7
rs8187925	9:75541962	A/C	ALDH1A1	intron	0.992	1.07476	0.0343	0.03555		7
rs8187928	9:75540828	T/C	ALDH1A1	intron	0.992	0.93016	0.0343	0.03464		7
rs8187945	9:75537298	A/G	ALDH1A1	intron	0.993	0.96996	0.0249	0.2207		5
rs8187950	9:75535038	A/G	ALDH1A1	intron	0.861	0.97932	0.0311	0.5008		7
rs8187953	9:75533767	C/G	ALDH1A1	intron	0.746	1.01238	0.0373	0.7417		5
rs8187960	9:75529854	T/C	ALDH1A1	intron	0.940	1.09363	0.0520	0.0855		7
rs8187974	9:75526866	A/C	ALDH1A1	intron	0.797	0.93146	0.0630	0.2601		2c
rs8187976	9:75525939	A/G	ALDH1A1	intron	0.967	0.97365	0.0256	0.2963		6
rs8187981	9:75521938	T/C	ALDH1A1	intron	0.968	0.99511	0.0107	0.644		7
rs8187988	9:75518097	T/G	ALDH1A1	intron	0.886	1.05919	0.0585	0.3252		5
rs8187996	9:75516495	T/C	ALDH1A1	intron	0.997	0.98059	0.0256	0.4428		7
rs8187999	9:75515809	C/G	ALDH1A1	untranslated-3	0.901	1.06056	0.0339	0.0825		6
rs8188000	9:75515669	T/C	ALDH1A1	untranslated-3	0.999	0.99780	0.0427	0.9597		6
SNP	Position	Alelle	Gene	Annotation	Info	Or	Se	P-value	eQTL	Score^*

Note: RegulomeDB score^*

score	supporting data	score	supporting data
1a	eQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak	6	other
2a	TF binding + matched TF motif + matched DNase Footprint + DNase peak	5	TF binding or DNase peak
1b	eQTL + TF binding + any motif + DNase Footprint + DNase peak	4	TF binding + DNase peak
2b	TF binding + any motif + DNase Footprint + DNase peak	3b	TF binding + matched TF motif
1c	eQTL + TF binding + matched TF motif + DNase peak	1f	eQTL + TF binding / DNase peak
2c	TF binding + matched TF motif + DNase peak	3a	TF binding + any motif + DNase peak
1d	eQTL + TF binding + any motif + DNase peak	1e	eQTL + TF binding + matched TF motif

CNV Information

The gene is not affected by CNV!

eQTL Information