SOX2-OT

Basic Information
Gene SymbolSOX2-OT
Entrez Id347689
Positionchr3:180774468..181460016
DescriptionSOX2 overlapping transcript
Gene typencRNA
SNP Information

SNPPositionAlelleGeneAnnotationInfoOrSeP-valueeQTLScore*
rs102123643:181342108T/GSOX2-OTintron0.9941.027160.01420.059753a
rs104703513:181106042A/GSOX2-OTintron0.9901.074230.01585.485E-66
rs104703523:181422197A/GSOX2-OTintron0.6811.041020.03160.20295
rs105137793:181254051T/CSOX2-OTintron0.9571.001500.01190.90166
rs108048853:180928466T/CSOX2-OTintron0.9861.085460.01351.369E-95
rs109370553:181073789T/CSOX2-OTintron0.9821.111710.03160.0007877
rs109370563:181115627A/CSOX2-OTintron0.9860.893510.03230.00049215
rs109370583:181220743T/CSOX2-OTintron0.9221.029630.01100.0078476
rs109370593:181235282A/GSOX2-OTintron0.9501.012380.01150.28537
rs109370603:181257196T/CSOX2-OTintron0.7720.963770.01410.0089977
rs109370613:181257270T/CSOX2-OTintron0.7640.971030.01220.015716
rs109370623:181301097T/CSOX2-OTintron0.9731.003910.01090.71976
rs109370633:181301161A/GSOX2-OTintron0.7600.992330.01820.67056
rs109370653:181394551A/TSOX2-OTintron0.8940.961650.01490.0085567
rs1112881023:180832034A/GSOX2-OTintron0.9160.969960.05830.60067
rs1113901503:180888796A/GSOX2-OTintron0.9781.043520.05940.47356
rs1114696433:181369676A/GSOX2-OTintron0.8941.024800.04390.57687
rs1115689563:181107830A/GSOX2-OTintron0.9171.044980.01220.0003177
rs1116372713:181322701T/CSOX2-OTintron0.8960.975020.01700.1366
rs1117034303:180905713A/GSOX2-OTintron0.9791.043940.05930.46895
rs1117569313:181246087A/GSOX2-OTintron0.8770.986690.03870.72987
rs1118143993:181195316A/GSOX2-OTintron0.8320.893870.03230.00050947
rs1118771753:181455778A/GSOX2-OTintron0.6261.057700.05420.30086
rs1118904753:181208601T/CSOX2-OTintron0.8240.996510.03090.90996
rs1120202113:181083906T/GSOX2-OTintron0.6320.977750.04520.61786
rs1120648633:180895394T/CSOX2-OTintron0.9791.043520.05940.47325
rs1120900683:180876452A/TSOX2-OTintron0.7240.904660.04120.014976
rs1121819603:181456030A/GSOX2-OTintron0.6331.075950.05930.21657
rs1122942543:181125156A/GSOX2-OTintron0.9920.931370.01586.993E-67
rs1124595573:180972716A/GSOX2-OTintron0.6220.817750.06620.0023577
rs1125521033:181455513C/GSOX2-OTintron0.6321.063640.05440.25657
rs1125526653:181456472A/TSOX2-OTintron0.6340.923760.05910.17977
rs1126794503:181451907A/GSOX2-OTintron0.6300.958010.03640.23847
rs1127270793:181455974A/CSOX2-OTintron0.6320.944880.05430.29666
rs1129378073:180772801T/CSOX2-OTnear-gene-50.6161.124460.06440.068487
rs1130110543:180889735A/TSOX2-OTintron0.9771.042790.05930.47966
rs1132048233:181454786T/GSOX2-OTintron0.6291.060240.05460.28427
rs1132777153:181319640A/GSOX2-OTintron0.8971.025620.01700.13587
rs1132805453:181238470A/GSOX2-OTintron0.8771.024090.03080.43927
rs1132987193:181445426C/GSOX2-OTintron0.6361.027270.04500.54925
rs1133354743:180930730A/GSOX2-OTintron0.8011.017960.04890.71525
rs1133803003:181218576A/GSOX2-OTintron0.8890.989750.03820.78697
rs1133887123:181319690T/CSOX2-OTintron0.8970.974820.01700.13336
rs1134528613:181233931T/CSOX2-OTintron0.8880.984620.03840.68656
rs1135863833:181099920A/CSOX2-OTintron0.6661.146140.04190.0011247
rs1136103403:181069461A/GSOX2-OTintron0.6860.889410.03980.0032436
rs1136901293:181322751A/GSOX2-OTintron0.8991.019790.02020.33146
rs1137737533:181205369T/CSOX2-OTintron0.8780.972390.05490.60957
rs1140959603:180815271A/GSOX2-OTintron0.7500.958390.04860.38247
rs1141060483:180973209A/GSOX2-OTintron0.8350.895830.04280.010137
rs1143279313:181124842T/CSOX2-OTintron0.8520.954560.01220.00013956
rs1145340793:181216627A/CSOX2-OTintron0.8920.999400.04880.99086
rs1145735573:180906919A/GSOX2-OTintron0.9291.096260.04810.055917
rs1146002943:181419367C/GSOX2-OTintron0.6730.953130.01680.0042375
rs1146022423:181195667A/GSOX2-OTintron0.9510.972870.05020.58466
rs1146085063:181297048T/GSOX2-OTintron0.8100.954470.04010.24537
rs1146556473:180893020A/GSOX2-OTintron,ncRNA0.7431.016840.04820.7297
rs1147220383:181362999T/CSOX2-OTintron0.9140.984620.04380.72366
rs1147402853:181287685A/GSOX2-OTintron0.8591.010250.05760.85887
rs1149104653:181319939A/GSOX2-OTintron0.9130.964640.01540.019597
rs1149506923:181081914C/GSOX2-OTintron0.7590.925890.04690.10087
rs1150032453:181375424A/GSOX2-OTintron0.8671.025210.04470.57686
rs1151608303:180912908T/CSOX2-OTintron0.9551.040600.03260.22196
rs1152578503:181451461A/CSOX2-OTintron0.6190.934450.05560.22217
rs1152965183:181030654A/GSOX2-OTintron0.9681.014910.02070.47437
rs1154841723:180848038A/CSOX2-OTintron0.7830.948190.04790.26617
rs1155138923:181082616A/TSOX2-OTintron0.6181.103400.06230.11447
rs1155503873:181254064T/CSOX2-OTintron0.7801.008840.02290.69867
rs1157356643:180840227A/GSOX2-OTintron0.9321.044670.04930.37557
rs1158025793:181064781T/GSOX2-OTintron0.9711.013690.02830.63016
rs1158114683:181137863C/GSOX2-OTintron0.9210.901050.03690.0047157
rs1158579013:180978540A/GSOX2-OTintron0.8320.926630.04440.085817
rs11587073:181221339A/GSOX2-OTintron0.9220.971130.01100.0076997
rs1158825713:181349040A/CSOX2-OTintron0.9211.012980.04370.76745
rs1159071923:180801564C/GSOX2-OTintron0.8071.066950.05080.20227
rs1159125583:180843831T/CSOX2-OTintron0.7241.109270.04790.030296
rs1159780123:180792285A/TSOX2-OTintron0.9390.925330.04430.079446
rs1160465313:181003830T/CSOX2-OTintron0.9221.033650.03240.30747
rs1161260973:181403356A/GSOX2-OTintron0.7071.052530.03110.099856
rs1161505213:180872220T/CSOX2-OTintron0.6051.103740.07170.16866
rs1161593063:181355299A/GSOX2-OTintron0.9191.013490.04370.75895
rs1162067593:180786499A/GSOX2-OTintron0.7270.905470.05870.090527
rs1162121483:181233686A/GSOX2-OTintron0.8480.999200.01540.95856
rs1162815623:181329833A/GSOX2-OTintron0.6650.974140.04680.57575
rs1163654253:181089744A/GSOX2-OTintron0.9880.893240.03230.00046777
rs1163694903:181273107A/GSOX2-OTintron0.8870.980300.05710.7276
rs1164602073:181195140A/CSOX2-OTintron0.6440.998800.05170.98136
rs1165568783:181348250A/GSOX2-OTintron0.7950.988570.03590.7496
rs1165582823:181357381T/GSOX2-OTintron0.9031.027780.04340.52776
rs1167095643:180934649T/CSOX2-OTintron0.6801.027060.06160.66426
rs1167321503:180891130T/CSOX2-OTintron,near-gene-50.9510.987870.02640.64367
rs1167702493:180882599A/CSOX2-OTintron0.6591.036760.02970.22437
rs1167778143:181273352T/CSOX2-OTintron0.8860.986790.05700.81526
rs1167960133:180811583A/CSOX2-OTintron0.9291.002300.02810.93617
rs1168299333:181046113A/GSOX2-OTintron0.6461.018060.05830.7596
rs117069353:181213827A/GSOX2-OTintron0.9980.949520.02170.01676
rs117081983:180857105A/TSOX2-OTintron1.0000.923390.01342.921E-97
rs117119483:181188505A/GSOX2-OTintron0.9901.078530.01431.189E-77
rs117125953:181192127A/TSOX2-OTintron0.9590.897810.03270.00096476
rs117142903:180853974A/GSOX2-OTintron0.9661.051380.02400.03676
rs117143323:180876865T/CSOX2-OTintron0.9880.923390.01364.73E-97
rs117169183:180904082A/CSOX2-OTintron0.9910.923210.01353.243E-96
rs117190263:181240259A/GSOX2-OTintron0.9420.947910.02690.047256
rs119144163:181235576T/CSOX2-OTintron0.9651.052740.02230.021126
rs119164183:181003722A/TSOX2-OTintron0.9860.922100.04790.090666
rs119165453:181237378T/CSOX2-OTintron0.9491.012270.01150.29027
rs119178863:181256027A/TSOX2-OTintron0.8130.967150.02850.245
rs119179993:181256247A/GSOX2-OTintron0.8060.967640.02850.24835
rs119196303:181009688A/GSOX2-OTintron0.9771.078320.04790.11567
rs119208103:181196948T/CSOX2-OTintron0.9881.066410.01550.000033696
rs119213613:181412347C/GSOX2-OTintron0.9350.974530.01600.10557
rs119225723:181008726A/TSOX2-OTintron0.9771.078320.04790.11547
rs119234473:181400102T/GSOX2-OTintron0.6970.947340.03160.086816
rs119247353:181380708T/CSOX2-OTintron0.9131.038940.01480.0098017
rs119248713:181255836A/GSOX2-OTintron0.9090.999200.01160.94334
rs119260783:180980531T/GSOX2-OTintron0.9921.083830.04780.091747
rs119278443:181383366T/CSOX2-OTintron0.9121.038110.01480.011237
rs120543993:181455466T/CSOX2-OTintron0.8130.956860.02050.031657
rs121525013:180881223T/CSOX2-OTintron0.9770.925430.01351.026E-87
rs121859303:181061700T/CSOX2-OTintron0.9951.020710.01140.070657
rs124853913:181205593A/CSOX2-OTintron0.9790.932860.01700.000042185
rs124877483:181424232A/TSOX2-OTintron0.8971.026750.01640.10765
rs124918673:181448558A/GSOX2-OTintron0.8601.033960.02050.10375
rs124921483:181008608T/CSOX2-OTintron0.9181.100430.03880.013683a
rs124963783:181423602C/GSOX2-OTintron0.6150.984620.01820.39465
rs124970083:181283743A/GSOX2-OTintron0.9271.013790.01100.21327
rs124972483:181424415C/GSOX2-OTintron0.9080.974530.01630.11235
rs124973643:180870202A/GSOX2-OTintron0.7230.992630.01340.58236
rs126294633:180917316A/GSOX2-OTintron0.8761.027370.01180.022247
rs126295073:180880563T/CSOX2-OTintron0.9951.083400.01352.711E-97
rs126295093:180880582T/CSOX2-OTintron0.9951.083400.01352.693E-97
rs126305173:181061481A/GSOX2-OTintron0.9840.891010.03230.00035387
rs126314153:181208602A/GSOX2-OTintron0.6831.044040.01300.00092486
rs126321363:180993424C/GSOX2-OTintron0.9640.885330.02001.115E-97
rs126329383:181110068A/GSOX2-OTintron1.0001.053690.01067.367E-77
rs126329463:181110261C/GSOX2-OTintron1.0000.949040.01067.477E-76
rs126336233:181023152A/GSOX2-OTintron0.9821.138370.03300.000085627
rs126337503:181046478A/CSOX2-OTintron0.9691.034480.01090.00197
rs126339813:181011435T/CSOX2-OTintron0.9630.887900.02002.577E-96
rs126341293:180836848T/CSOX2-OTintron1.0001.080580.01324.235E-97
rs126351783:180797921T/GSOX2-OTintron0.9871.125240.01939.931E-106
rs126353383:181164506T/CSOX2-OTintron1.0000.953420.01066.336E-66
rs126355353:180860415A/GSOX2-OTintron0.9851.084050.01373.418E-96
rs126363033:181104283A/GSOX2-OTintron0.9860.893510.03230.00049277
rs126379383:180847721T/CSOX2-OTintron1.0001.080580.01324.227E-97
rs126387763:180852446T/CSOX2-OTintron0.8000.937440.01331.206E-66
rs126388203:180787494A/GSOX2-OTintron0.9930.921640.01351.635E-97
rs126390383:181023262T/CSOX2-OTintron0.9830.880380.03310.00011916
rs126905903:181297473T/GSOX2-OTintron0.9091.025320.01240.044087
rs126964903:180899278A/CSOX2-OTintron0.9831.051800.01137.166E-66
rs130605443:181413171A/GSOX2-OTintron0.9280.974630.01610.11064
rs130611173:181186466T/CSOX2-OTintron0.9511.062050.01940.0019247
rs130624753:180792579T/CSOX2-OTintron1.0001.082850.01343.2E-97
rs130636403:180876961T/CSOX2-OTintron0.9831.054010.01122.514E-67
rs130646423:180942375A/GSOX2-OTintron0.6671.000800.06060.98947
rs130648663:180789706T/GSOX2-OTintron0.9970.925430.01324.553E-97
rs130653103:180871950T/CSOX2-OTintron0.9970.923020.01342.574E-97
rs130654663:180871913A/GSOX2-OTintron0.9970.923020.01342.573E-97
rs130676183:181319659C/GSOX2-OTintron0.9421.021530.01220.082356
rs130688713:181307219A/CSOX2-OTintron0.9231.004410.01690.79567
rs130700153:181416606T/GSOX2-OTintron0.7101.001300.01260.91685
rs130709973:180903028A/GSOX2-OTintron0.9681.129300.01965.225E-105
rs130712793:180872987A/CSOX2-OTintron0.9970.922840.01342.299E-96
rs130718363:180873343A/GSOX2-OTintron0.9971.083290.01342.622E-96
rs130722123:180843401C/GSOX2-OTintron0.9920.948660.01112.253E-67
rs130723583:180873415A/GSOX2-OTintron0.9340.888070.02512.323E-67
rs130725783:180843625T/CSOX2-OTintron0.9230.888610.02419.529E-77
rs130741363:181124924A/TSOX2-OTintron0.8970.965700.01130.0019336
rs130754743:180845657A/TSOX2-OTintron0.9970.925240.01323.878E-97
rs130772453:180849619A/GSOX2-OTintron1.0000.923120.01342.572E-96
rs130776433:180849838A/GSOX2-OTintron1.0000.923020.01342.508E-97
rs130811803:181098717T/CSOX2-OTintron0.9850.893510.03230.00048636
rs130812343:181339395A/CSOX2-OTintron0.9881.025210.01420.079156
rs130822543:181339765A/GSOX2-OTintron0.9711.021430.01430.1387
rs130834423:181387704A/CSOX2-OTintron0.8880.962520.01500.010826
rs130848893:181257119A/GSOX2-OTintron0.7891.027270.01210.026857
rs130864673:180798451T/CSOX2-OTintron0.8940.884880.02571.89E-67
rs130865293:181340141A/GSOX2-OTintron0.9790.986890.01330.32075
rs130867003:180798672A/GSOX2-OTintron1.0001.082850.01343.059E-96
rs130867383:180798727A/GSOX2-OTintron1.0001.080690.01347.151E-96
rs130906383:180948059A/TSOX2-OTintron0.9880.922100.01351.971E-97
rs130924323:180996038T/GSOX2-OTintron0.9681.064490.01311.676E-66
rs130970023:180919081T/GSOX2-OTintron0.9261.007830.01430.58647
rs130983823:181061928T/CSOX2-OTintron0.9950.979810.01140.072036
rs130999803:180849768A/TSOX2-OTintron0.9950.994320.01500.70196
rs131003793:180853192A/CSOX2-OTintron0.9990.922750.01342.199E-95
rs131004683:180874238T/GSOX2-OTintron0.9971.083290.01342.681E-97
rs133186553:180995657T/CSOX2-OTintron0.9901.016030.05610.77736
rs133218583:180868485T/CSOX2-OTintron0.8550.956950.01280.00060466
rs133225383:181103591A/GSOX2-OTintron0.9900.930900.01585.466E-66
rs133255083:181213106T/CSOX2-OTintron0.8911.014610.03790.70167
rs133261333:181227894C/GSOX2-OTintron0.8921.018670.03800.62647
rs133269043:181183388A/GSOX2-OTintron0.9870.936880.01560.000030676
rs13512353:181166485T/CSOX2-OTintron0.9891.070040.01560.000013877
rs13512363:181169206T/CSOX2-OTintron0.9941.004110.01150.72296
rs13512383:181251955A/TSOX2-OTintron0.9271.001700.01210.88745
rs13512393:181251650T/CSOX2-OTintron0.9040.994710.01180.65167
rs1378847273:180933791A/GSOX2-OTintron0.8330.902490.04220.01515-
rs1380180333:181174417T/CSOX2-OTintron0.9691.040390.05590.4785-
rs1380455123:181344527A/CSOX2-OTintron0.9151.016230.04400.7141-
rs1382116853:180811458A/GSOX2-OTintron0.7881.038840.03440.2686-
rs1383280613:181233272A/GSOX2-OTintron0.9180.930160.04080.07613-
rs1384040663:181209105T/CSOX2-OTintron0.7211.096580.04620.04586-
rs1384062073:181124782T/CSOX2-OTintron0.8990.946770.01118.853E-7-
rs1384905533:181064674A/GSOX2-OTintron0.9291.025010.03330.4579-
rs1385240283:181017859A/GSOX2-OTintron0.6901.079610.05950.1976-
rs1388296553:180847483A/GSOX2-OTintron0.9340.956280.04960.3676-
rs1389778753:180788614T/CSOX2-OTintron1.0001.082640.01343.497E-9-
rs1390733213:181215587A/CSOX2-OTintron0.8431.162180.06010.01246-
rs1391190673:181295003A/CSOX2-OTintron0.6211.080470.05720.176-
rs1391430073:180915839A/GSOX2-OTintron0.9281.095270.04810.05845-
rs1391563123:181168161A/GSOX2-OTintron0.6890.940260.06860.3691-
rs1393361103:181124920T/CSOX2-OTintron0.8890.956570.01120.0000764-
rs1393883803:181456216T/CSOX2-OTintron0.6061.027270.06340.6716-
rs1397741413:181014429A/CSOX2-OTintron0.6191.026240.04670.5789-
rs1398043423:180868106T/CSOX2-OTintron0.9971.084370.01351.834E-9-
rs1398472783:181206898A/GSOX2-OTintron0.9350.965220.05640.53-
rs1399053103:181066105A/GSOX2-OTintron0.7370.950470.05060.3155-
rs1402871763:181067164T/GSOX2-OTintron0.9761.057490.05760.3319-
rs1402901013:181082667A/TSOX2-OTintron0.9210.909550.03940.01613-
rs1403642253:181454309T/CSOX2-OTintron0.6291.065670.05480.2453-
rs1403776263:180838725T/CSOX2-OTintron0.7811.008940.04840.8547-
rs1407395923:181199587T/CSOX2-OTintron0.9641.002800.02700.9177-
rs1409943833:181042966A/GSOX2-OTintron0.6060.940540.05990.3063-
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rs98489693:181094912A/CSOX2-OTintron0.9930.994810.01160.65017
rs98492233:180976869A/GSOX2-OTintron0.9900.985700.05600.79686
rs98495703:180977079A/GSOX2-OTintron0.9920.984230.05570.77517
rs98497363:181063310T/CSOX2-OTintron0.8910.987870.01170.2976
rs98532643:180833269A/TSOX2-OTintron1.0000.925430.01324.271E-96
rs98536063:181349281T/CSOX2-OTintron1.0001.006220.01090.57236
rs98544533:181018741A/GSOX2-OTintron0.9810.996310.01600.81566
rs98544613:181310591T/CSOX2-OTintron0.9881.004810.01080.65567
rs98552923:181161490A/GSOX2-OTintron,near-gene-50.9891.069620.01560.000015866
rs98583133:180812993A/GSOX2-OTintron0.9930.949140.01112.824E-66
rs98583653:180813165T/CSOX2-OTintron0.9790.994420.01120.61757
rs98583693:181106851A/GSOX2-OTintron0.9881.073900.01575.934E-66
rs98595573:180830910A/TSOX2-OTintron0.9971.085350.01325.299E-107
rs98603003:181124856T/CSOX2-OTintron0.6120.918880.03620.019256
rs98610723:181176399T/CSOX2-OTintron0.9751.003810.02600.8836
rs98626903:181180409A/GSOX2-OTintron1.0001.047910.01069.735E-66
rs98636973:181107864A/GSOX2-OTintron0.9880.960790.01070.00018257
rs98637003:181016806T/CSOX2-OTintron0.9861.026030.05620.64796
rs98652403:181368853A/GSOX2-OTintron0.9931.018160.01360.18557
rs98660643:181163641A/GSOX2-OTintron0.9751.003410.02600.89716
rs98667743:181062970A/GSOX2-OTintron0.9960.979810.01140.072187
rs98702963:181352573A/GSOX2-OTintron0.9930.983830.01360.22957
rs98708743:180816853A/TSOX2-OTintron0.9970.924780.01322.883E-96
rs98710813:181370182A/TSOX2-OTintron0.9841.021220.01370.12615
rs98720013:181178572T/CSOX2-OTintron1.0000.954470.01060.000010696
rs98729943:181182342T/CSOX2-OTintron0.9860.936790.01560.000029466
rs98730133:181182392A/CSOX2-OTintron0.9881.001500.01150.89977
rs98737433:181349392A/TSOX2-OTintron1.0001.006220.01090.57177
rs98757843:181288682A/GSOX2-OTintron0.8281.012680.01470.39297
rs98765133:181188066A/GSOX2-OTintron0.9891.002100.01110.84876
rs98809543:181220392T/CSOX2-OTintron0.9520.990150.01130.38337
rs98820283:181355889T/CSOX2-OTintron0.9990.994810.01100.63937
rs98820653:181129180T/CSOX2-OTintron0.9891.008230.01160.48116
rs98839663:181272465A/TSOX2-OTintron0.9690.968410.01600.044357
rs99681663:181370066T/CSOX2-OTintron0.8860.981570.04350.66867
SNPPositionAlelleGeneAnnotationInfoOrSeP-valueeQTLScore*

  Note: RegulomeDB score*
score supporting data score supporting data
1aeQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak6other
2aTF binding + matched TF motif + matched DNase Footprint + DNase peak5TF binding or DNase peak
1beQTL + TF binding + any motif + DNase Footprint + DNase peak4TF binding + DNase peak
2bTF binding + any motif + DNase Footprint + DNase peak3bTF binding + matched TF motif
1ceQTL + TF binding + matched TF motif + DNase peak1feQTL + TF binding / DNase peak
2cTF binding + matched TF motif + DNase peak3aTF binding + any motif + DNase peak
1deQTL + TF binding + any motif + DNase peak1eeQTL + TF binding + matched TF motif
CNV Information

The gene is not affected by CNV!

eQTL Information

There is no eQTL snp about this gene!

KEGG annotation

There is no pathway information about this gene!

GO annotation

There is no GO annotation information about this gene!

Co-expression Information

There is no gene co-express this gene!

Expression pattern
Note: Avg - average expression of all genes
Description Age Description Age Description Age
Embryonic4-8 PCWEarly fetal18-10 PCWEarly fetal210-13 PCW
Early mid-fetal113-16 PCWEarly mid-fetal216-19 PCWLate mid-fetal19-24 PCW
Late fetal24-38 PCWNeonatal & early infancy0-6 MLate infancy6-12 M
Early childhood1-6 YMiddle and late childhood6-12 YAdolescence12-20 Y
Young adulthood20-40 YMiddle adulthood40-60 YLate adulthood60 Y+
Protein-protein interaction

There is no PPI information about this gene in InWeb