LINC01004

Basic Information
Gene SymbolLINC01004
Entrez Id100216546
Positionchr7:104622194..104631612
Descriptionlong intergenic non-protein coding RNA 1004
Gene typencRNA
SNP Information

SNPPositionAlelleGeneAnnotationInfoOrSeP-valueeQTLScore*
rs102327987:104632599A/GLINC01004near-gene-50.9261.010760.02590.68027
rs102765837:104623892A/CLINC01004ncRNA0.9900.995810.01540.78254
rs119717327:104627874T/CLINC01004ncRNA0.9721.016230.01580.3077
rs119749287:104627873A/GLINC01004ncRNA0.9721.016130.01580.31017
rs132306607:104651058A/GLINC01004ncRNA0.9881.005110.01530.74016
rs1407433247:104650962A/CLINC01004near-gene-30.9460.931560.03570.0471-
rs1446176297:104651814A/GLINC01004ncRNA0.7670.886210.06350.05719-
rs177776947:104629892T/CLINC01004ncRNA0.9151.009040.02470.71595
rs28917617:104652168T/CLINC01004ncRNA0.9931.007730.01530.61294
rs31738727:104625069A/GLINC01004ncRNA0.9911.003910.01540.79793a
rs345587077:104631530T/CLINC01004ncRNA0.9551.004210.01600.79376
rs38237527:104624626T/CLINC01004ncRNA0.9971.064490.01101.494E-84
rs47300667:104622402T/GLINC01004ncRNA0.9720.964160.01330.0061125
rs624866167:104627904C/GLINC01004ncRNA0.7590.942140.05080.24126
rs69763947:104632980A/GLINC01004near-gene-51.0000.948290.01077.21E-77
rs731840587:104630211C/GLINC01004ncRNA0.6361.050330.06280.4342b
rs743658637:104651557C/GLINC01004ncRNA0.7921.036550.03220.26515
rs8880867:104626690A/GLINC01004ncRNA1.0001.055170.01075.469E-75
SNPPositionAlelleGeneAnnotationInfoOrSeP-valueeQTLScore*

  Note: RegulomeDB score*
score supporting data score supporting data
1aeQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak6other
2aTF binding + matched TF motif + matched DNase Footprint + DNase peak5TF binding or DNase peak
1beQTL + TF binding + any motif + DNase Footprint + DNase peak4TF binding + DNase peak
2bTF binding + any motif + DNase Footprint + DNase peak3bTF binding + matched TF motif
1ceQTL + TF binding + matched TF motif + DNase peak1feQTL + TF binding / DNase peak
2cTF binding + matched TF motif + DNase peak3aTF binding + any motif + DNase peak
1deQTL + TF binding + any motif + DNase peak1eeQTL + TF binding + matched TF motif
CNV Information

The gene is not affected by CNV!

eQTL Information

There is no eQTL snp about this gene!

KEGG annotation

There is no pathway information about this gene!

GO annotation

There is no GO annotation information about this gene!

Co-expression Information

There is no gene co-express this gene!

Expression pattern

There is no expression information about these genes!

Note: Avg - average expression of all genes
Description Age Description Age Description Age
Embryonic4-8 PCWEarly fetal18-10 PCWEarly fetal210-13 PCW
Early mid-fetal113-16 PCWEarly mid-fetal216-19 PCWLate mid-fetal19-24 PCW
Late fetal24-38 PCWNeonatal & early infancy0-6 MLate infancy6-12 M
Early childhood1-6 YMiddle and late childhood6-12 YAdolescence12-20 Y
Young adulthood20-40 YMiddle adulthood40-60 YLate adulthood60 Y+
Protein-protein interaction

There is no PPI information about this gene in InWeb