GALNT10

Basic Information
Gene SymbolGALNT10
Entrez Id55568
Positionchr5:153570295..153800544
Descriptionpolypeptide N-acetylgalactosaminyltransferase 10
Gene typeprotein-coding
SNP Information

SNPPositionAlelleGeneAnnotationInfoOrSeP-valueeQTLScore*
rs100367705:153604066A/GGALNT10intron0.9840.993820.01140.5875
rs100392235:153640877A/GGALNT10intron0.9961.010250.01130.36717
rs10049775:153708963A/GGALNT10intron0.9980.996410.01130.75247
rs100517995:153648470A/GGALNT10intron0.9880.931180.01341.103E-77
rs100521665:153636310T/CGALNT10intron0.9700.988470.01130.30217
rs100572485:153669038A/GGALNT10intron0.9940.945260.01960.0040596
rs100573695:153693475T/CGALNT10intron0.9931.015010.01060.1585
rs100596365:153620581T/GGALNT10intron0.9940.989650.01130.35475
rs100674205:153673404T/CGALNT10intron0.9940.945730.01960.0044297
rs100695685:153667183A/TGALNT10intron0.9760.995610.01110.68955
rs100703455:153625622T/GGALNT10intron0.8370.996110.01160.7396
rs100742765:153636327A/GGALNT10intron0.9961.010150.01130.3687
rs100743495:153636589T/CGALNT10intron0.9961.010050.01130.37365
rs100743825:153636464T/GGALNT10intron0.9961.010150.01130.37017
rs100745925:153636983T/CGALNT10intron0.9961.010250.01130.36535
rs10077635:153639893A/GGALNT10intron0.9991.026960.01080.013545
rs100801915:153605658T/CGALNT10intron0.9190.982950.01160.13836
rs10152625:153700187C/GGALNT10intron0.9951.012780.01250.30777
rs10152635:153700453C/GGALNT10intron0.9950.986490.01250.27725
rs104633385:153632671T/CGALNT10intron0.6661.090020.05040.087356
rs104767995:153623855A/GGALNT10intron0.9940.989650.01130.35497
rs104770955:153622094T/CGALNT10intron0.9911.048120.01250.00017835
rs108755835:153613716C/GGALNT10intron0.9950.976580.01080.028255
rs1120956685:153679623T/CGALNT10intron0.6790.944970.04590.2176
rs1123615105:153686952A/GGALNT10intron0.9731.040500.03020.18936
rs1125804495:153659054T/GGALNT10intron0.9661.074010.01424.567E-77
rs1131848325:153685473A/GGALNT10intron0.8970.971610.03580.42086
rs1137400765:153605497A/GGALNT10intron0.9760.943560.01330.000012696
rs1141899795:153600900A/GGALNT10intron0.8751.018980.05110.71255
rs1142343645:153651861T/CGALNT10intron0.8450.945260.03380.096185
rs1144011615:153621152T/GGALNT10intron0.7410.926080.03910.049547
rs1146124245:153673334A/GGALNT10intron0.8220.888870.04480.008537
rs1147682735:153642574T/CGALNT10intron0.8101.091220.03440.011257
rs1148330535:153602142T/CGALNT10intron0.9000.944590.04280.18257
rs1148479215:153624845A/GGALNT10intron0.8071.094610.03460.0089265
rs1148792775:153669945A/CGALNT10intron0.7901.040190.03690.28596
rs1149026955:153606018A/GGALNT10intron0.9491.052850.03250.11317
rs1153932045:153610555T/CGALNT10intron0.6661.085560.04960.098045
rs1156593375:153615320A/GGALNT10intron0.8610.983050.05690.7647
rs1157567115:153602040A/TGALNT10intron0.9631.063110.03320.065327
rs1161264945:153607577C/GGALNT10intron0.8750.981080.05110.70877
rs1161337845:153609970A/GGALNT10intron0.9610.941760.03310.06997
rs1162344195:153681873A/GGALNT10intron0.7830.939880.05080.22255
rs1166397015:153602706A/GGALNT10intron0.9000.961560.03660.28387
rs117404745:153680747A/TGALNT10intron0.9700.940730.01113.936E-86
rs117410845:153693807T/CGALNT10intron1.0000.991440.01210.47837
rs117451725:153708855A/GGALNT10intron1.0000.973950.01390.056976
rs117462235:153616670A/TGALNT10intron1.0001.013490.01530.3834
rs117475585:153693334A/GGALNT10intron1.0001.007430.01210.54275
rs117500205:153604654T/CGALNT10intron0.8591.009240.02420.70386
rs119509045:153668985A/GGALNT10intron0.9940.944220.01960.0033957
rs119517425:153629068T/CGALNT10intron0.9961.010450.01130.35527
rs119521525:153617372A/GGALNT10intron0.9950.985700.01550.35074
rs119535605:153701770T/CGALNT10intron0.9961.011770.01250.34997
rs119541895:153668639T/CGALNT10intron0.9921.054640.01950.0063943a
rs119542905:153668948T/CGALNT10intron0.9941.057810.01960.0041597
rs119549865:153708325A/CGALNT10intron1.0000.973950.01390.056727
rs119563035:153674757T/CGALNT10intron0.9930.944690.01970.0037827
rs121639895:153628249A/GGALNT10intron0.9910.988960.01130.3236
rs125144785:153617993T/GGALNT10intron0.8951.018770.01260.13986
rs125147915:153667124T/CGALNT10intron0.9820.976290.01130.032735
rs125173835:153600891A/CGALNT10intron0.9711.007730.01140.49785
rs125194015:153609014T/CGALNT10intron0.9910.973950.01080.014587
rs125206425:153610073T/CGALNT10intron0.9901.010960.01150.34397
rs125215545:153603003T/CGALNT10intron0.9921.025210.01090.022045
rs125217485:153636994A/GGALNT10intron0.9310.978040.01210.065515
rs125220935:153603147A/TGALNT10intron0.9910.975990.01090.025546
rs125221335:153603269T/CGALNT10intron0.9801.025730.01090.020095
rs125226235:153618256C/GGALNT10intron0.9830.978730.01090.048645
rs125226825:153618529A/GGALNT10intron0.9901.011360.01120.31365
rs125233895:153647324A/GGALNT10intron0.9991.027060.01080.013032b
rs125234415:153654667T/CGALNT10intron0.9980.973650.01080.013235
rs126541635:153611920A/GGALNT10intron0.9950.990350.01120.396
rs126593755:153613188C/GGALNT10intron0.9951.009750.01120.39076
rs131542255:153660254A/CGALNT10intron0.8300.951040.04870.30337
rs131555585:153651962T/CGALNT10intron0.9991.026960.01080.013556
rs131586525:153673897T/CGALNT10intron0.9980.981870.01120.10126
rs131615025:153686366C/GGALNT10intron0.9991.035620.01080.0012536
rs131630175:153609327T/CGALNT10intron0.9591.015720.03390.64427
rs131669735:153650323A/GGALNT10intron0.9971.038000.01060.00046287
rs131673335:153650318C/GGALNT10intron0.9980.963770.01060.00052196
rs131691855:153601658T/CGALNT10intron0.9921.025210.01090.021927
rs131697245:153668942A/CGALNT10intron1.0000.987680.01450.39146
rs131703925:153605659A/GGALNT10intron0.9291.023470.01130.040056
rs131705115:153605675A/GGALNT10intron0.9601.021630.01100.051476
rs131724305:153681465T/CGALNT10intron0.9950.980390.01110.076216
rs131760515:153687422T/CGALNT10intron0.9991.034900.01080.0015467
rs131774315:153608112T/GGALNT10intron0.9921.025010.01090.022766
rs131796685:153612484A/GGALNT10intron1.0000.996010.01330.76587
rs131809255:153665250T/CGALNT10intron0.9870.972780.01080.010722b
rs131809285:153695382A/GGALNT10intron1.0001.008640.01210.48037
rs131823995:153696006C/GGALNT10intron0.9970.990350.01220.42357
rs131858695:153605035T/CGALNT10intron0.9771.025420.01100.021977
rs1390216745:153688077A/GGALNT10intron0.6590.998900.04980.9824-
rs1402841165:153628280T/GGALNT10intron0.9080.995510.03100.8853-
rs1403914465:153600554T/CGALNT10intron0.9001.040190.03660.2819-
rs1428803265:153625743C/GGALNT10intron0.9590.932860.01363.346E-7-
rs1439782025:153688889A/GGALNT10intron0.8400.971900.05070.5744-
rs1448634755:153626124A/GGALNT10intron0.9931.074120.01371.828E-7-
rs1497152725:153650822T/CGALNT10intron0.8371.047910.03180.1417-
rs1505598185:153614122A/CGALNT10intron0.7840.895740.04530.01507-
rs1534185:153703523A/GGALNT10intron0.8870.993920.03690.86857
rs1534305:153683070A/TGALNT10intron0.9110.989360.04000.797
rs1534315:153648926A/TGALNT10intron0.9921.074760.01335.702E-86
rs1534375:153652736T/CGALNT10intron0.9990.954180.01230.00014424
rs1534395:153653623T/GGALNT10intron1.0100.961460.02320.089845
rs1534405:153653898T/CGALNT10intron1.0000.961270.02310.087225
rs1534415:153654079T/CGALNT10intron0.9951.048120.01230.00014115
rs1534425:153655459T/GGALNT10intron1.0100.962230.02310.095675
rs15416635:153620638T/CGALNT10intron0.9930.990840.01130.41355
rs15454735:153662029A/GGALNT10intron0.9920.981770.01090.090456
rs15492155:153707795A/GGALNT10intron0.9961.011770.01250.34747
rs1661905:153660761A/GGALNT10intron0.9900.989650.01130.35877
rs170962175:153628958A/GGALNT10intron0.9940.990940.01130.41826
rs171158705:153676948T/CGALNT10intron1.0000.966860.01080.0018583b
rs171159245:153701335T/CGALNT10intron0.9941.013690.01250.27617
rs1716835:153648632A/GGALNT10intron0.8070.958390.05110.40566
rs175524955:153649114A/GGALNT10intron1.0000.931460.01361.907E-77
rs175526395:153651459A/GGALNT10intron1.0000.930070.01361.02E-76
rs175530775:153665854T/CGALNT10intron0.9831.034270.01080.001745
rs176272965:153628345A/GGALNT10intron0.9961.073580.01372.134E-76
rs176281185:153647261C/GGALNT10intron1.0000.930720.01371.416E-74
rs176287685:153663571T/CGALNT10intron0.9101.015420.02020.44726
rs176290505:153668922A/GGALNT10intron0.8830.976870.01310.075286
rs176291955:153676502T/CGALNT10intron0.9981.058340.01124.428E-74
rs176294245:153689451C/GGALNT10intron0.8820.981570.02070.36884
rs176297925:153695948A/CGALNT10intron0.9931.014810.01050.16437
rs1812161885:153625728A/GGALNT10intron0.9011.008740.03190.7857-
rs1825939385:153629648T/CGALNT10intron0.8800.900140.05160.04162-
rs1848675385:153628159A/GGALNT10intron0.7900.932110.05410.1937-
rs1850276645:153638469A/TGALNT10intron0.7670.887450.05780.03886-
rs1901980455:153626172A/GGALNT10intron0.7870.958200.05560.4428-
rs1904831495:153617935A/GGALNT10intron0.8351.010560.05540.8492-
rs19909495:153602857T/CGALNT10intron0.9840.995810.01500.78067
rs20345795:153634825A/GGALNT10intron0.9961.010150.01130.37115
rs20345805:153634932A/GGALNT10intron0.9961.010150.01130.37117
rs20345815:153635312T/CGALNT10intron0.9950.990450.01130.39346
rs20345825:153640192T/CGALNT10intron0.9960.989950.01130.36755
rs20810155:153606932T/CGALNT10intron0.9910.975800.01090.023777
rs20986685:153630547T/CGALNT10intron0.9980.964830.01060.00076755
rs21126875:153611248A/GGALNT10intron0.9910.989460.01150.35375
rs21228955:153622768T/GGALNT10intron0.9940.989650.01130.35584
rs21228965:153622812T/CGALNT10intron0.9941.010560.01130.34963a
rs23512325:153630449T/CGALNT10intron0.9960.989260.01130.33835
rs24316855:153642439A/GGALNT10intron0.9990.930440.01347.53E-87
rs24345285:153639894C/GGALNT10intron0.9990.930440.01347.469E-85
rs24345295:153640046A/GGALNT10intron0.9950.929690.01345.236E-85
rs24345315:153640348T/CGALNT10intron0.9991.074760.01347.47E-85
rs24345325:153640472A/GGALNT10intron0.9991.074760.01347.482E-86
rs24345335:153640963C/GGALNT10intron0.9991.074760.01347.475E-87
rs24345345:153641790C/GGALNT10intron0.9990.930440.01347.44E-86
rs24345355:153641935C/GGALNT10intron0.9980.930440.01347.622E-85
rs24435155:153639656A/TGALNT10intron0.9751.011770.01140.30436
rs24435165:153639798A/GGALNT10intron0.9990.930440.01347.417E-86
rs24435175:153640308A/GGALNT10intron0.9981.074870.01347.272E-85
rs24435185:153640377A/GGALNT10intron0.9980.930530.01347.763E-87
rs24435195:153640854A/GGALNT10intron0.9980.930250.01346.87E-86
rs24435205:153641505T/CGALNT10intron0.9990.930440.01347.477E-87
rs24435215:153641573A/TGALNT10intron0.9980.930620.01348.343E-87
rs24435225:153642045T/GGALNT10intron0.9990.930440.01347.492E-85
rs24435235:153642125A/CGALNT10intron0.9990.930530.01347.807E-87
rs24435245:153642196T/CGALNT10intron0.9990.930340.01347.191E-87
rs24435255:153642436T/CGALNT10intron0.9990.930440.01347.53E-87
rs24435265:153656530T/CGALNT10intron1.0100.966470.01060.001334
rs24435275:153657712A/GGALNT10intron1.0001.043310.02300.064445
rs24435285:153665939T/CGALNT10intron0.9870.965410.01080.0010745
rs24435295:153666404A/GGALNT10intron0.9740.991640.01140.45974
rs24435305:153666564A/TGALNT10intron0.9731.032620.02290.16155
rs2533445:153648670T/CGALNT10intron0.8650.942140.03110.055496
rs2535495:153658714T/GGALNT10intron0.9911.010660.01130.34852b
rs2535515:153661602T/CGALNT10intron0.9901.010660.01130.3487
rs284219795:153672371T/GGALNT10intron0.9940.945630.01960.0043387
rs284592835:153671999A/GGALNT10intron0.9940.945630.01960.0043837
rs285346215:153672519T/CGALNT10intron0.9940.945630.01960.0043427
rs286723295:153694905C/GGALNT10intron1.0000.991340.01210.47286
rs287052865:153632496T/CGALNT10intron1.0001.003000.01330.82046
rs339992325:153696160T/GGALNT10intron0.9881.033240.01980.098665
rs341414505:153608872A/CGALNT10intron0.9890.975700.01090.023897
rs343315035:153687239A/GGALNT10intron0.9991.034900.01080.0015527
rs345090575:153601262A/GGALNT10intron0.9721.052850.01290.000065614
rs345225835:153605640A/GGALNT10intron0.9490.983340.03380.61936
rs345227255:153606366T/CGALNT10intron0.9920.975800.01090.023897
rs345300155:153658913T/GGALNT10intron0.9940.973850.01080.013937
rs345520895:153686702A/GGALNT10intron0.9991.033760.01080.002187
rs345581305:153687316A/TGALNT10intron0.9991.033650.01080.0022617
rs346689345:153604433T/CGALNT10intron0.9751.054320.01300.000047196
rs347617885:153628709A/TGALNT10intron0.9960.989550.01130.35147
rs347805255:153602069A/GGALNT10intron0.9751.054430.01300.000045986
rs348601705:153687073A/GGALNT10intron0.9791.032720.01100.0033126
rs348756055:153608085A/GGALNT10intron0.9610.983050.03390.61537
rs349021295:153653323T/CGALNT10intron0.9031.019180.01250.12987
rs349569755:153687257T/CGALNT10intron0.9991.033650.01080.0022557
rs350455005:153685076A/GGALNT10intron0.9910.944410.01123.456E-77
rs351662655:153701396A/CGALNT10intron0.9511.004010.03610.91187
rs351869545:153634821C/GGALNT10intron0.9971.037070.01060.00062315
rs352062865:153699515T/GGALNT10intron0.9871.034790.01990.085767
rs352277085:153687329A/GGALNT10intron0.9990.967440.01080.0022577
rs354897635:153690089A/GGALNT10intron0.7810.944220.06110.34737
rs354956535:153687040T/CGALNT10intron0.9951.058550.01124.228E-77
rs355085095:153605490T/CGALNT10intron0.9611.019690.03390.56546
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rs361263995:153666940A/CGALNT10intron0.9851.014710.01460.31844
rs38631975:153633482A/TGALNT10intron0.9990.964250.01060.00062717
rs38631985:153633682T/CGALNT10intron0.9991.036970.01060.0006397
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rs39599185:153651013T/CGALNT10intron0.9871.076700.01388.648E-87
rs43852655:153635320A/GGALNT10intron0.9960.990050.01130.37356
rs44752915:153626546A/GGALNT10intron0.9410.989950.01550.51397
rs46232045:153616972A/GGALNT10intron0.9951.011470.01120.30977
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rs49583705:153623514T/GGALNT10intron0.9941.010560.01130.35245
rs49583715:153658366T/GGALNT10intron0.9921.018880.01090.085096
rs49587175:153602801A/GGALNT10intron0.9900.973950.01080.014797
rs49587185:153632345T/GGALNT10intron0.9981.036970.01060.00064666
rs49587195:153632486T/GGALNT10intron0.9981.027160.01080.012647
rs49587205:153632651A/GGALNT10intron0.9961.010150.01130.37146
rs49587235:153667787A/GGALNT10intron0.9971.034170.01070.0016224
rs49587265:153691773T/CGALNT10intron0.9920.983930.01060.1254
rs49587275:153691916C/GGALNT10intron0.9920.984420.01060.13675
rs4976215:153643896T/CGALNT10intron0.9450.892530.05620.0436
rs5066745:153638299T/CGALNT10intron0.9991.074760.01347.494E-84
rs5146995:153639043T/CGALNT10intron0.9950.931370.01341.092E-76
rs5208435:153638219A/GGALNT10intron0.9990.930440.01347.496E-84
rs580074705:153666790T/CGALNT10intron0.9651.063640.01291.692E-64
rs585999225:153616349T/CGALNT10intron0.9891.074550.01371.571E-75
rs587241895:153670990A/GGALNT10intron0.9940.945820.01960.0044837
rs597696135:153661579A/GGALNT10intron0.9910.981570.01090.087846
rs603252795:153673241T/CGALNT10intron0.9941.058340.01960.003847
rs605528285:153655584T/CGALNT10intron0.9971.074120.01361.54E-77
rs606013885:153661425A/GGALNT10intron0.9911.018670.01090.088657
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rs611970565:153681208A/CGALNT10intron0.9911.074550.01371.531E-77
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rs728086375:153665526T/CGALNT10intron0.9961.039250.02330.098972b
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rs738029645:153622821A/GGALNT10intron0.9911.074870.01371.323E-73a
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rs750446955:153600232A/GGALNT10intron0.7790.976190.03660.51053a
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rs768561235:153671861A/GGALNT10intron0.9921.007830.01770.65866
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rs77183185:153675891A/GGALNT10intron0.9961.034170.01090.0019926
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rs789193255:153655240A/GGALNT10intron0.9891.071540.01493.555E-67
rs793122205:153708235A/GGALNT10intron0.8460.968020.04140.43227
rs794329885:153664718T/CGALNT10intron0.9701.061310.02940.042997
rs795266795:153648991A/GGALNT10intron0.6151.091220.05580.11747
rs796812045:153684383A/GGALNT10intron0.8890.996210.03150.90367
rs796840655:153707617A/GGALNT10intron0.8451.033140.04140.4317
rs797723715:153633640A/CGALNT10intron0.8871.060350.02510.01986
rs797994415:153608660A/GGALNT10intron0.9251.084910.04020.042473a
rs798567375:153703269A/GGALNT10intron0.9301.002200.02590.93165
rs801077235:153654879A/GGALNT10intron0.9411.069830.01680.000056937
rs802908635:153681026A/CGALNT10intron0.7721.026960.03820.48637
rs8853825:153630869T/CGALNT10intron0.9961.010760.01130.34176
rs8890295:153690473C/GGALNT10intron0.9920.984030.01060.12647
rs8890305:153698183A/CGALNT10intron0.9861.012170.01230.32525
rs8890315:153698362A/GGALNT10intron0.9940.985410.01050.1645
rs8890325:153702252A/GGALNT10intron0.9990.987780.01240.32045
rs8963835:153698460A/GGALNT10intron0.9960.988370.01240.34875
rs93247675:153632841T/CGALNT10intron0.8890.986000.01140.21577
rs93247685:153632848A/GGALNT10intron0.9311.007430.01130.5097
rs93247715:153687745T/CGALNT10intron0.9980.967350.01080.0022157
rs93247725:153687803A/TGALNT10intron0.9980.967440.01080.0022217
rs93247745:153690374T/CGALNT10intron0.9930.987380.01250.316
rs953975:153652315A/GGALNT10intron0.9991.048230.01230.00013537
rs97908755:153673848A/GGALNT10intron1.0001.015210.01240.22377
rs97910275:153673830A/GGALNT10intron1.0000.985010.01240.22417
rs9880235:153621824A/GGALNT10intron0.9931.009550.01130.40177
rs9880245:153621706A/TGALNT10intron0.9951.025930.01080.017976
rs99861195:153690417A/CGALNT10intron0.9931.016230.01060.1276
SNPPositionAlelleGeneAnnotationInfoOrSeP-valueeQTLScore*

  Note: RegulomeDB score*
score supporting data score supporting data
1aeQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak6other
2aTF binding + matched TF motif + matched DNase Footprint + DNase peak5TF binding or DNase peak
1beQTL + TF binding + any motif + DNase Footprint + DNase peak4TF binding + DNase peak
2bTF binding + any motif + DNase Footprint + DNase peak3bTF binding + matched TF motif
1ceQTL + TF binding + matched TF motif + DNase peak1feQTL + TF binding / DNase peak
2cTF binding + matched TF motif + DNase peak3aTF binding + any motif + DNase peak
1deQTL + TF binding + any motif + DNase peak1eeQTL + TF binding + matched TF motif
CNV Information

The gene is not affected by CNV!

eQTL Information

There is no eQTL snp about this gene!

KEGG annotation
KEGG pathway annotationhsa00512; Mucin type O-Glycan biosynthesis
KEGG pathway annotationhsa01100; Metabolic pathways
GO annotation
GO pathway annotationGO:0000139; Golgi membrane
GO pathway annotationGO:0004653; polypeptide N-acetylgalactosaminyltransferase activity
GO pathway annotationGO:0006493; protein O-linked glycosylation
GO pathway annotationGO:0016021; integral component of membrane
GO pathway annotationGO:0016266; O-glycan processing
GO pathway annotationGO:0030246; carbohydrate binding
GO pathway annotationGO:0043687; post-translational protein modification
GO pathway annotationGO:0044267; cellular protein metabolic process
GO pathway annotationGO:0046872; metal ion binding
Co-expression Information

There is no gene co-express this gene!

Expression pattern
Note: Avg - average expression of all genes
Description Age Description Age Description Age
Embryonic4-8 PCWEarly fetal18-10 PCWEarly fetal210-13 PCW
Early mid-fetal113-16 PCWEarly mid-fetal216-19 PCWLate mid-fetal19-24 PCW
Late fetal24-38 PCWNeonatal & early infancy0-6 MLate infancy6-12 M
Early childhood1-6 YMiddle and late childhood6-12 YAdolescence12-20 Y
Young adulthood20-40 YMiddle adulthood40-60 YLate adulthood60 Y+
Protein-protein interaction

There is no PPI information about this gene in InWeb