GABRP

Basic Information
Gene SymbolGABRP
Entrez Id2568
Positionchr5:170210723..170241051
Descriptiongamma-aminobutyric acid (GABA) A receptor, pi
Gene typeprotein-coding
SNP Information

SNPPositionAlelleGeneAnnotationInfoOrSeP-valueeQTLScore*
rs100394775:170229354T/GGABRPintron0.9851.018770.01480.20877
rs100430475:170231936A/GGABRPintron0.9760.981960.01470.21436
rs100547435:170230688A/GGABRPintron1.0100.990840.01220.44896
rs100615135:170234234A/GGABRPintron0.9940.990740.01240.45147
rs100632545:170234721T/CGABRPintron0.9940.991730.01230.50137
rs100658105:170227251T/GGABRPintron0.9901.007830.01230.5257
rs100660925:170223642A/CGABRPintron0.9990.997100.01080.78976
rs100743065:170233424A/GGABRPintron0.9951.007530.01230.54457
rs100764135:170234420A/GGABRPintron0.9961.007130.01230.56216
rs1150550635:170222539A/CGABRPintron0.7470.949040.05080.30327
rs1157919885:170216735A/TGABRPintron0.9800.980980.03920.62387
rs119588105:170215778T/CGABRPintron0.9971.007230.01940.71084
rs125144075:170224915T/CGABRPintron0.9890.991040.01240.46435
rs125155755:170238724A/GGABRPintron0.9920.997300.01420.84846
rs131591605:170237384T/CGABRPintron0.9870.970540.03940.44735
rs131716105:170227070A/GGABRPintron0.9880.976290.03870.53557
rs131817385:170219723T/CGABRPintron0.9751.023880.03940.54847
rs131899115:170218238C/GGABRPintron0.9790.980690.03920.61935
rs133551155:170230812T/CGABRPintron0.9920.992130.01230.52087
rs1418270305:170233550A/GGABRPintron0.8030.980690.05360.7158-
rs1426387425:170231304A/GGABRPintron0.8101.077350.05490.1753-
rs1430375105:170216766T/CGABRPintron0.6870.944310.04790.2311-
rs1449706375:170218108A/GGABRPintron0.7850.992630.04910.88-
rs1462624865:170233569T/CGABRPintron0.8430.928490.04870.1277-
rs1509274875:170226565T/CGABRPintron0.7021.001000.03690.9784-
rs176508715:170222923T/CGABRPintron0.8040.978530.01790.22576
rs1841576375:170230166T/CGABRPintron0.7410.909370.07060.1787-
rs1880084575:170219212T/CGABRPintron0.7081.004610.04970.9257-
rs1885429205:170223067A/GGABRPintron0.7481.051900.05080.3193-
rs22165895:170238089A/GGABRPintron0.9851.014500.01070.17817
rs23031355:170232614T/CGABRPintron0.9970.997500.01070.81797
rs28793545:170221067C/GGABRPintron0.9850.995210.01090.65657
rs349438735:170227217A/TGABRPintron0.9831.010660.03790.7817
rs356898935:170235371A/GGABRPintron0.9901.031690.03930.42717
rs357033155:170227352A/GGABRPintron0.9880.976290.03870.5367
rs360499125:170241227A/CGABRPnear-gene-30.9880.971810.03950.46945
rs37928095:170237372T/CGABRPintron0.9940.992330.01230.53045
rs38054545:170241168A/GGABRPnear-gene-30.9970.994120.01230.63425
rs38054555:170240494T/CGABRPuntranslated-30.9950.993720.01070.55925
rs38054565:170240174T/CGABRPuntranslated-30.9971.006620.01230.59187
rs38054585:170238904T/CGABRPintron0.9970.993320.01230.58575
rs38054605:170218489C/GGABRPintron0.9661.002100.01140.85534
rs38157625:170215820A/TGABRPintron0.9971.007230.01940.71073a
rs38286215:170219678A/GGABRPintron0.9441.011060.01990.58227
rs412753315:170216508T/CGABRPintron0.8500.987870.03460.72367
rs48676305:170219349A/GGABRPintron0.9620.989060.01080.30917
rs48680295:170217502T/CGABRPintron0.9891.010660.01100.33657
rs48680305:170224916A/GGABRPintron0.9841.018980.01480.20335
rs48680315:170227334T/CGABRPintron0.9980.997600.01070.82446
rs48680325:170227470T/CGABRPintron0.9950.998600.01070.89946
rs48680335:170234264A/TGABRPintron0.9770.988570.01270.36786
rs623927925:170220333C/GGABRPintron0.6990.970450.04130.46776
rs65559185:170217020A/GGABRPintron0.9951.010960.01930.5727
rs65559195:170229336A/GGABRPintron0.9881.023780.03870.54377
rs65559205:170232112A/GGABRPintron0.9971.002200.01070.83597
rs65559215:170237090T/CGABRPintron0.9870.997500.01070.81565
rs68676835:170225314A/GGABRPintron0.9320.989360.01120.33947
rs68679075:170225179A/GGABRPintron0.9850.988570.01210.34196
rs68761695:170231527T/CGABRPintron0.9971.002400.01070.82447
rs68849175:170221185A/GGABRPintron0.9930.996610.01070.74957
rs68887655:170225100T/CGABRPintron0.9960.998200.01070.86664
rs68889695:170225240A/TGABRPintron0.9971.001900.01070.85587
rs728376895:170235849C/GGABRPintron0.7911.021630.01830.24055
rs733271315:170218280A/GGABRPintron0.9910.989950.01930.59975
rs746240905:170225050A/TGABRPintron0.9890.991640.01240.49752b
rs746871555:170226474A/GGABRPintron0.9821.012170.01250.3327
rs752113685:170233354T/CGABRPintron0.9921.032210.03920.41877
rs790933705:170229744T/GGABRPintron0.9931.030970.03920.43575
rs93135255:170223210A/GGABRPintron1.0001.001400.01070.8937
rs99686925:170234109T/CGABRPintron0.9900.986390.01400.32896
SNPPositionAlelleGeneAnnotationInfoOrSeP-valueeQTLScore*

  Note: RegulomeDB score*
score supporting data score supporting data
1aeQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak6other
2aTF binding + matched TF motif + matched DNase Footprint + DNase peak5TF binding or DNase peak
1beQTL + TF binding + any motif + DNase Footprint + DNase peak4TF binding + DNase peak
2bTF binding + any motif + DNase Footprint + DNase peak3bTF binding + matched TF motif
1ceQTL + TF binding + matched TF motif + DNase peak1feQTL + TF binding / DNase peak
2cTF binding + matched TF motif + DNase peak3aTF binding + any motif + DNase peak
1deQTL + TF binding + any motif + DNase peak1eeQTL + TF binding + matched TF motif
CNV Information

The gene is not affected by CNV!

eQTL Information

There is no eQTL snp about this gene!

KEGG annotation
KEGG pathway annotationhsa04080; Neuroactive ligand-receptor interaction
KEGG pathway annotationhsa04723; Retrograde endocannabinoid signaling
KEGG pathway annotationhsa04727; GABAergic synapse
KEGG pathway annotationhsa05032; Morphine addiction
KEGG pathway annotationhsa05033; Nicotine addiction
GO annotation
GO pathway annotationGO:0004890; GABA-A receptor activity
GO pathway annotationGO:0007165; signal transduction
GO pathway annotationGO:0008068; extracellular-glutamate-gated chloride channel activity
GO pathway annotationGO:0030054; cell junction
GO pathway annotationGO:0034707; chloride channel complex
GO pathway annotationGO:0045211; postsynaptic membrane
GO pathway annotationGO:1902476; chloride transmembrane transport
Co-expression Information

There is no gene co-express this gene!

Expression pattern
Note: Avg - average expression of all genes
Description Age Description Age Description Age
Embryonic4-8 PCWEarly fetal18-10 PCWEarly fetal210-13 PCW
Early mid-fetal113-16 PCWEarly mid-fetal216-19 PCWLate mid-fetal19-24 PCW
Late fetal24-38 PCWNeonatal & early infancy0-6 MLate infancy6-12 M
Early childhood1-6 YMiddle and late childhood6-12 YAdolescence12-20 Y
Young adulthood20-40 YMiddle adulthood40-60 YLate adulthood60 Y+
Protein-protein interaction

There is no PPI information about this gene in InWeb