CCDC39

Basic Information
Gene SymbolCCDC39
Entrez Id339829
Positionchr3:180331796..180397283
Descriptioncoiled-coil domain containing 39
Gene typeprotein-coding
SNP Information

SNPPositionAlelleGeneAnnotationInfoOrSeP-valueeQTLScore*
rs109370423:180393513T/CCCDC39intron0.9871.003610.01360.79427
rs109370433:180393606T/CCCDC39intron0.6540.978630.03050.47897
rs109370443:180425009A/CCCDC39near-gene-30.9870.987680.01370.36467
rs109370463:180464522A/TCCDC39intron0.9980.999800.01420.99077
rs109370473:180502853C/GCCDC39intron0.7180.990050.02050.62647
rs109370503:180578261T/CCCDC39intron0.9910.934350.01191.259E-85
rs1114308983:180472974A/GCCDC39intron0.7780.958390.04060.29587
rs1117819533:180353214A/GCCDC39intron0.9111.016030.02910.58417
rs1120195303:180344382A/GCCDC39intron0.9040.934170.04640.14216
rs1120529373:180485014T/CCCDC39intron0.7601.049700.04020.22716
rs1121280583:180465050C/GCCDC39intron0.7931.111600.04420.016826
rs1123333173:180501971A/GCCDC39intron0.7780.958290.04070.29495
rs1124584253:180456424A/GCCDC39intron0.7421.033140.03350.33056
rs1127381983:180377529C/GCCDC39missense0.7681.056010.03580.12826
rs1138170233:180534055A/CCCDC39intron0.8301.003610.04790.94096
rs1138911813:180396865A/TCCDC39intron0.7191.021530.04650.64725
rs1139891633:180500965T/CCCDC39intron0.7420.969090.03380.3536
rs1140201043:180567503A/TCCDC39intron0.6261.053590.06270.40566
rs1140276823:180583988A/CCCDC39intron0.9460.994120.02610.82017
rs1140304413:180483371T/CCCDC39intron0.8920.972290.03210.38266
rs1141516683:180357882A/GCCDC39intron0.7841.006720.04740.88786
rs1141880453:180386672C/GCCDC39intron0.9621.023370.05180.65517
rs1142849643:180388047A/GCCDC39intron0.6661.020300.03230.53457
rs1143427033:180336785C/GCCDC39intron0.9080.963190.03240.24745
rs1148724733:180544767T/CCCDC39intron0.7591.075190.04810.13125
rs1150022653:180519404A/GCCDC39intron0.7480.996900.02870.91377
rs1150040353:180557440A/TCCDC39intron0.6160.947050.07120.4457
rs1150545583:180354043T/GCCDC39intron0.6670.990250.03620.78757
rs1155630863:180510855T/CCCDC39intron0.7201.070470.06160.26827
rs1158965543:180568056T/CCCDC39intron0.7221.075950.03760.051547
rs1159524953:180379773T/CCCDC39missense0.7440.923020.05790.16687
rs1161353933:180513987A/GCCDC39intron0.8230.867360.03920.00028437
rs1162040493:180537317A/GCCDC39intron0.7900.870840.04150.00086836
rs1162314653:180426426A/GCCDC39ncRNA0.9680.972190.05130.58287
rs1163537233:180512015A/GCCDC39intron0.6920.981180.06000.75166
rs1163795213:180495025A/CCCDC39intron0.9880.997000.01440.8377
rs1165403663:180577195A/TCCDC39intron0.9681.049700.03420.15686
rs1167196533:180442939A/CCCDC39intron0.9590.961650.05120.44536
rs1167943973:180564259T/CCCDC39intron0.6971.032410.06270.61136
rs1168147703:180521120A/GCCDC39intron0.6360.948950.06220.39946
rs1168163323:180353274T/CCCDC39intron0.8011.002700.03430.9377
rs117148273:180452865T/CCCDC39intron0.9940.998200.01470.9045
rs119161443:180550675T/CCCDC39intron0.9810.928950.01980.00020266
rs119163453:180584571A/CCCDC39intron0.9951.047280.01420.0011666
rs119185623:180443482A/GCCDC39intron0.9830.965700.02150.10487
rs119187103:180579810A/GCCDC39intron0.9960.955520.01420.0013887
rs119191313:180567837T/CCCDC39intron0.9741.020000.01890.29467
rs119192903:180583256T/CCCDC39intron0.9960.955420.01420.001346
rs119235773:180358057T/GCCDC39intron0.9160.985010.02940.60667
rs119256753:180506546A/GCCDC39intron0.9811.049910.02220.028087
rs119263923:180570599T/CCCDC39intron0.9880.928300.01980.0001666
rs119264643:180579805A/GCCDC39intron0.9961.015820.01900.40817
rs119272423:180516620T/CCCDC39intron0.9931.009140.01290.48015
rs119274133:180550398T/CCCDC39intron0.9811.076480.01980.0002027
rs119279103:180480275A/CCCDC39intron1.0001.014200.01060.18216
rs120543963:180563084A/CCCDC39intron0.9540.968990.01080.0035736
rs121066693:180575785A/GCCDC39intron0.9980.983440.01900.3787
rs123302783:180493389T/CCCDC39intron1.0001.002000.01260.87486
rs123304763:180493373A/CCCDC39intron1.0001.014810.01060.16346
rs124967703:180385704A/CCCDC39intron0.9860.994220.01360.67026
rs126290973:180369553T/CCCDC39intron0.6820.969670.02310.1827
rs126295793:180583081A/GCCDC39intron0.9951.029320.01060.0064267
rs126340703:180544880T/CCCDC39intron0.9371.031280.01350.022785
rs126341683:180566334T/GCCDC39intron0.9950.971810.01060.0071746
rs126356823:180524108A/GCCDC39intron0.9171.010760.01480.46917
rs126368583:180534672A/TCCDC39intron0.9831.003810.01780.82867
rs130618133:180394783T/GCCDC39intron0.9961.004710.01350.72687
rs130663253:180541598A/CCCDC39intron0.9901.030660.01060.0046237
rs130676783:180559330A/GCCDC39intron0.9910.969860.01060.0040167
rs130692443:180441172A/GCCDC39intron0.9640.967440.02180.1297
rs130711733:180517701A/GCCDC39intron0.9830.996810.01440.82477
rs130717473:180572423T/CCCDC39intron0.6511.022760.04660.62967
rs130747803:180462975T/CCCDC39intron0.9711.035410.02190.11236
rs130781993:180527105T/CCCDC39intron0.9620.966090.01080.0014215
rs130786273:180477970A/GCCDC39intron0.9921.003000.01430.83466
rs130799823:180448640A/GCCDC39intron0.9991.010660.01060.31697
rs130805963:180503070T/CCCDC39intron0.8250.989460.02240.63517
rs130837003:180373531T/GCCDC39intron0.9640.963770.02160.087957
rs130839683:180396500A/GCCDC39intron0.9961.011770.01330.38047
rs130908313:180392195A/GCCDC39intron0.9870.996410.01350.79227
rs130978833:180386213A/GCCDC39intron0.9750.966760.02140.11447
rs131010693:180494161T/CCCDC39intron0.9880.997000.01440.83527
rs133228273:180577588T/CCCDC39intron0.9961.029010.01060.0070767
rs133236423:180486056T/CCCDC39intron1.0001.001700.01260.89366
rs133239663:180518812A/CCCDC39intron0.9940.997900.01270.86847
rs134342823:180367745A/GCCDC39intron0.9120.993520.02960.82695
rs13566063:180377071T/CCCDC39intron0.9861.003410.01360.80357
rs1382511803:180545403T/CCCDC39intron0.9601.049380.03460.1638-
rs1382633063:180358368A/GCCDC39intron0.9541.006820.02870.8132-
rs1384163253:180512335T/CCCDC39intron0.9091.137460.05660.02283-
rs1385069213:180540999T/GCCDC39intron0.6281.003910.06180.9496-
rs1385292463:180474505T/CCCDC39intron0.6671.081990.05940.1847-
rs1386271853:180455921A/GCCDC39intron0.6661.079830.05920.1951-
rs1386743843:180554891T/CCCDC39intron0.9610.955040.03440.1805-
rs1393300793:180441709T/CCCDC39intron0.7011.016130.05800.7828-
rs1396630573:180574461A/GCCDC39intron0.8901.002100.03040.9437-
rs1397781543:180466626C/GCCDC39intron0.7721.022450.04750.6406-
rs1397829573:180537643A/GCCDC39intron0.9250.987780.05070.8078-
rs1401135123:180391982A/GCCDC39intron0.8061.025830.02400.2874-
rs1403143603:180430808T/CCCDC39intron0.7571.041330.06240.5165-
rs1405899663:180580305A/TCCDC39intron0.7581.050640.04760.2988-
rs1409118333:180455157A/GCCDC39intron0.6430.978730.06550.7426-
rs1410057023:180463897A/GCCDC39intron0.7050.985110.05790.796-
rs1412378413:180338765T/CCCDC39intron0.8711.058340.06130.3548-
rs1415869583:180533473T/CCCDC39intron0.7900.957340.04420.3244-
rs1417188863:180485733A/GCCDC39intron0.8860.994220.05870.9215-
rs1426343323:180552813C/GCCDC39intron0.6160.814970.07370.005505-
rs1427796023:180356303T/CCCDC39intron0.8401.010450.05600.852-
rs1431354793:180561530A/GCCDC39intron0.9260.987970.05060.8118-
rs1435182523:180353768A/CCCDC39intron0.9571.005720.02870.8415-
rs1443054433:180486186A/GCCDC39intron0.8371.164980.05760.007958-
rs1444655023:180461391A/TCCDC39intron0.6671.082420.05930.1816-
rs1446656043:180473986T/GCCDC39intron0.8951.025420.05600.6547-
rs1452962373:180501828A/GCCDC39intron0.7370.979900.04930.6814-
rs1453384433:180430904T/CCCDC39intron0.7270.975800.04640.5983-
rs1454322093:180384223A/GCCDC39intron0.7200.882850.06040.03917-
rs1454943493:180520150A/GCCDC39intron0.9221.014100.03330.6752-
rs1463775613:180498169C/GCCDC39intron0.8681.001000.03710.978-
rs1464824053:180386060A/GCCDC39intron0.7091.127500.06020.04614-
rs1468476163:180569498T/CCCDC39intron0.7451.121650.04890.01894-
rs1469050413:180444366C/GCCDC39intron0.6270.980000.07060.7747-
rs1470282593:180337169T/GCCDC39intron0.8500.877040.05180.01137-
rs1471537853:180456433T/CCCDC39intron0.7390.941390.06110.323-
rs1473060703:180432382T/CCCDC39intron0.8181.030150.06210.6327-
rs1474590523:180550349A/GCCDC39intron0.9250.987970.05070.8109-
rs1477662893:180484696T/CCCDC39intron0.7441.013190.04700.7796-
rs1477876703:180360951C/GCCDC39intron0.9410.956480.01460.002283-
rs1478889943:180429492A/CCCDC39intron0.6751.014300.06340.8227-
rs1480868443:180492979A/GCCDC39intron0.7060.984720.05780.7894-
rs1485615013:180374963A/GCCDC39intron0.7261.031690.06180.6139-
rs1491446563:180371629T/CCCDC39intron0.6390.986290.06280.8258-
rs1494547083:180352048T/CCCDC39intron0.8911.075300.03320.02851-
rs1496984183:180520101T/CCCDC39intron0.8450.996310.03270.9098-
rs1502751073:180515667A/GCCDC39intron0.6470.993220.07190.9246-
rs1505590423:180485890A/TCCDC39intron0.7470.943740.05650.3056-
rs1507142023:180457045A/TCCDC39intron0.8931.161020.05670.008408-
rs15188563:180470217T/CCCDC39intron0.9971.009850.01280.44287
rs15188573:180431621A/TCCDC39intron0.9650.970740.05120.56195
rs15188583:180469892T/CCCDC39intron0.9991.009950.01280.43867
rs15188593:180478774A/GCCDC39intron0.9990.990150.01280.43996
rs15188603:180479705T/CCCDC39intron1.0000.990640.01280.46095
rs15188623:180471551A/CCCDC39intron1.0001.002900.01260.81847
rs15188633:180471706C/GCCDC39intron1.0001.009950.01280.44057
rs15188643:180389056A/CCCDC39intron0.9941.003910.01350.77316
rs15188653:180389279A/CCCDC39intron0.9940.996110.01350.77476
rs15188673:180437886A/GCCDC39intron0.9890.988860.01060.2915
rs15201703:180552199A/GCCDC39intron0.9281.024600.02330.29767
rs16074563:180481935A/GCCDC39intron1.0000.990540.01280.45757
rs16074573:180482003T/GCCDC39intron0.9781.016740.01190.16536
rs16074583:180482004T/CCCDC39intron0.9781.016640.01190.1686
rs16074593:180388710T/CCCDC39intron0.9931.003810.01350.77697
rs16076773:180584955A/TCCDC39intron0.9950.954660.01420.0011246
rs16076783:180584718T/CCCDC39intron0.9911.070900.01199.503E-96
rs168317983:180350754T/CCCDC39intron0.9531.040810.01340.002857
rs168318333:180386328A/GCCDC39intron0.9461.011570.05080.82087
rs168318703:180433154A/CCCDC39intron0.9670.965900.05100.49636
rs168320273:180523951A/CCCDC39intron0.8800.977160.02180.28857
rs168320413:180530195T/CCCDC39intron0.9581.014610.02050.48127
rs1808574053:180444073A/GCCDC39intron0.6851.016230.04780.7366-
rs1811677063:180571705A/GCCDC39intron0.6860.940350.06430.3387-
rs1821160543:180373505T/CCCDC39intron0.6141.078100.07150.2932-
rs1822949803:180394798T/CCCDC39intron0.6921.055700.04950.2738-
rs1834534363:180549158T/GCCDC39intron0.9111.012170.05050.8101-
rs1836537473:180394989T/CCCDC39intron0.6970.952370.03710.1891-
rs1843418903:180444632T/CCCDC39intron0.8071.043830.05000.3907-
rs1845688513:180527106A/GCCDC39intron0.6141.054540.07130.4562-
rs1846307603:180527905A/TCCDC39intron0.6051.053060.04030.1987-
rs1847898223:180444592T/CCCDC39intron0.7261.043100.04750.3752-
rs1851443593:180513885T/CCCDC39intron0.8371.145450.04020.0007332-
rs1860982563:180582811T/CCCDC39intron0.9670.951230.03450.1473-
rs1879695693:180434894C/GCCDC39intron0.9611.029840.05090.5631-
rs1880611593:180394886A/CCCDC39intron0.6341.020300.05900.7332-
rs1887504543:180394991T/CCCDC39intron0.9010.943560.03360.08356-
rs1891018153:180351338A/GCCDC39intron0.9580.993620.02870.8247-
rs1894505553:180356651A/GCCDC39intron0.7451.167420.06410.01567-
rs1906971953:180484468T/CCCDC39intron0.7801.077780.05800.1966-
rs1908236423:180386006A/CCCDC39intron0.8331.088170.06510.1945-
rs1911144973:180525593T/CCCDC39intron0.7451.179750.06320.00891-
rs1912735073:180578301C/GCCDC39intron0.6210.949610.06270.4095-
rs1918932213:180540693T/CCCDC39intron0.7450.892260.04900.01996-
rs1925431713:180560461A/GCCDC39intron0.6311.053800.06270.4033-
rs19495473:180530726T/CCCDC39intron0.9810.997100.01770.86977
rs20905783:180435217T/CCCDC39intron0.9890.988960.01060.2957
rs20905793:180435199T/CCCDC39intron0.9881.011160.01060.2967
rs21395513:180536365A/GCCDC39intron0.9820.938190.01231.905E-77
rs21395523:180573845A/GCCDC39intron0.9971.047390.01420.0011357
rs21395533:180579452T/CCCDC39intron0.9960.955420.01420.0013366
rs21733033:180342293A/GCCDC39intron0.8701.026750.02700.32927
rs21768173:180567642T/CCCDC39intron0.9860.986390.01900.4716
rs21768183:180574033C/GCCDC39intron0.9970.983640.01900.38497
rs22928963:180396974A/GCCDC39intron1.0001.005410.01350.68863a
rs23377423:180568799T/CCCDC39intron0.9970.954660.01420.0011057
rs23377433:180576673A/TCCDC39intron0.9921.070260.01191.245E-87
rs23377443:180577422A/GCCDC39intron0.9881.069830.01201.738E-86
rs23377453:180577458T/CCCDC39intron0.9971.047280.01420.0011627
rs23384353:180367887A/CCCDC39intron0.9320.954090.01460.0013326
rs23384363:180366067T/CCCDC39coding-synon0.9171.007730.02950.79517
rs285006833:180503024T/CCCDC39intron0.9610.995010.01300.69977
rs286870333:180443950A/GCCDC39intron0.9941.000000.01430.99856
rs287672123:180518779T/CCCDC39intron0.9941.002100.01270.86837
rs288129143:180484904T/CCCDC39intron0.9401.014300.01380.30577
rs288420223:180482721A/GCCDC39intron0.9951.002200.01260.86376
rs288494643:180482706T/CCCDC39intron1.0001.009440.01280.46076
rs288917993:180497113T/CCCDC39intron0.9950.989260.01280.40087
rs341305033:180425676A/TCCDC39ncRNA0.9861.012480.01370.36377
rs342347203:180575773T/CCCDC39intron0.7780.992530.02280.74277
rs343036823:180493828C/GCCDC39intron0.9391.060990.02460.016067
rs343562253:180551297T/CCCDC39intron0.9810.928950.01980.00020265
rs343733353:180355042A/TCCDC39intron0.9521.040810.01340.0028647
rs344809233:180442993T/CCCDC39intron0.9131.022140.01990.27267
rs345114663:180473948C/GCCDC39intron0.9970.957530.02190.047536
rs346092973:180505609T/CCCDC39intron0.9871.003000.01440.83717
rs346912883:180522750T/CCCDC39intron0.8301.002300.01540.884
rs347134093:180532727T/GCCDC39intron0.9150.885330.02501.133E-67
rs348248653:180514719T/CCCDC39intron0.9680.949420.02230.020136
rs352101943:180487006T/CCCDC39intron0.9890.955040.02200.036256
rs356002793:180523095A/GCCDC39intron0.8271.068970.02350.0045635
rs356029913:180388953A/GCCDC39intron0.7530.951420.04830.30256
rs357693543:180561371A/GCCDC39intron0.9901.030040.01060.0053837
rs358197393:180531845A/CCCDC39intron0.9900.969860.01060.0040966
rs359735383:180483429T/CCCDC39intron0.9950.958010.02190.050557
rs38494273:180368737A/TCCDC39intron0.8021.060350.03040.054326
rs38557383:180387249C/GCCDC39intron0.9920.996010.01350.7657
rs38605133:180368253A/GCCDC39intron0.9200.962230.01330.0037237
rs38662263:180582654A/GCCDC39intron0.9911.070260.01191.263E-86
rs42575493:180512367A/GCCDC39intron0.9980.997900.01260.86977
rs42879143:180495191T/GCCDC39intron1.0001.014710.01060.16637
rs43819363:180484597A/GCCDC39intron1.0001.014200.01160.22587
rs43819373:180484639A/GCCDC39intron1.0001.002400.01260.84627
rs44882663:180535405T/CCCDC39intron0.9901.056120.01106.929E-77
rs45352243:180479488A/GCCDC39intron1.0000.990350.01280.44857
rs45805523:180507037T/CCCDC39intron0.9811.049910.02220.028055
rs45993073:180487464T/CCCDC39intron0.9921.047280.02200.035936
rs46182203:180487243A/GCCDC39intron0.9920.954850.02200.035977
rs46213293:180488885A/GCCDC39intron0.9990.990640.01280.46146
rs46421243:180491847T/CCCDC39intron1.0001.002000.01260.87297
rs48549093:180393136A/GCCDC39intron0.9940.995910.01350.76266
rs48549103:180427774C/GCCDC39intron0.9720.989160.01070.30747
rs48549823:180353238T/CCCDC39intron0.9500.955330.01450.0016787
rs48549863:180392840A/GCCDC39intron0.9740.972680.01730.10837
rs48549893:180488807T/CCCDC39intron0.9881.003000.01440.83316
rs48549923:180545384T/CCCDC39intron0.9731.077350.01474.394E-75
rs48549943:180552153A/GCCDC39intron0.9910.969670.01060.0038527
rs579799763:180563075A/CCCDC39intron0.9410.997700.05890.96916
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rs582956663:180583963A/GCCDC39intron0.9930.954180.01430.0010176
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rs98826983:180582101A/CCCDC39intron0.9951.047390.01430.0011677
rs98831003:180490489T/CCCDC39intron1.0001.009140.01280.4766
rs98831163:180490519T/CCCDC39intron1.0001.002300.01260.85466
rs98832623:180543195T/CCCDC39intron0.9770.937070.01890.00059727
SNPPositionAlelleGeneAnnotationInfoOrSeP-valueeQTLScore*

  Note: RegulomeDB score*
score supporting data score supporting data
1aeQTL + TF binding + matched TF motif + matched DNase Footprint + DNase peak6other
2aTF binding + matched TF motif + matched DNase Footprint + DNase peak5TF binding or DNase peak
1beQTL + TF binding + any motif + DNase Footprint + DNase peak4TF binding + DNase peak
2bTF binding + any motif + DNase Footprint + DNase peak3bTF binding + matched TF motif
1ceQTL + TF binding + matched TF motif + DNase peak1feQTL + TF binding / DNase peak
2cTF binding + matched TF motif + DNase peak3aTF binding + any motif + DNase peak
1deQTL + TF binding + any motif + DNase peak1eeQTL + TF binding + matched TF motif
CNV Information

The gene is not affected by CNV!

eQTL Information

There is no eQTL snp about this gene!

KEGG annotation

There is no pathway information about this gene!

GO annotation
GO pathway annotationGO:0001947; heart looping
GO pathway annotationGO:0003341; cilium movement
GO pathway annotationGO:0003356; regulation of cilium beat frequency
GO pathway annotationGO:0005856; cytoskeleton
GO pathway annotationGO:0005930; axoneme
GO pathway annotationGO:0030317; sperm motility
GO pathway annotationGO:0030324; lung development
GO pathway annotationGO:0035469; determination of pancreatic left/right asymmetry
GO pathway annotationGO:0036159; inner dynein arm assembly
GO pathway annotationGO:0044458; motile cilium assembly
GO pathway annotationGO:0060285; cilium-dependent cell motility
GO pathway annotationGO:0060287; epithelial cilium movement involved in determination of left/right asymmetry
GO pathway annotationGO:0070286; axonemal dynein complex assembly
GO pathway annotationGO:0071907; determination of digestive tract left/right asymmetry
GO pathway annotationGO:0071910; determination of liver left/right asymmetry
Co-expression Information

There is no gene co-express this gene!

Expression pattern
Note: Avg - average expression of all genes
Description Age Description Age Description Age
Embryonic4-8 PCWEarly fetal18-10 PCWEarly fetal210-13 PCW
Early mid-fetal113-16 PCWEarly mid-fetal216-19 PCWLate mid-fetal19-24 PCW
Late fetal24-38 PCWNeonatal & early infancy0-6 MLate infancy6-12 M
Early childhood1-6 YMiddle and late childhood6-12 YAdolescence12-20 Y
Young adulthood20-40 YMiddle adulthood40-60 YLate adulthood60 Y+
Protein-protein interaction